Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0009 | ATGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTCTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCTCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCGGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA | 1776 | 44.54 | MRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITSKQQFLFPNIVLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGSDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE | 591 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1745229 | 1752778 | + | CaPI482276_10g000090.1 | Cam10g0009 | 136672 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0009 | 591 | Pfam | Hsp20/alpha crystallin family | 508 | 588 | IPR002068 | - | |
Cam10g0009 | 591 | Gene3D | - | 297 | 395 | IPR036431 | GO:0003677(InterPro) | |
Cam10g0009 | 591 | Gene3D | - | 487 | 591 | IPR008978 | - | |
Cam10g0009 | 591 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cam10g0009 | 591 | SUPERFAMILY | ARID-like | 291 | 398 | IPR036431 | GO:0003677(InterPro) | |
Cam10g0009 | 591 | CDD | ACD_sHsps_p23-like | 510 | 586 | - | - | |
Cam10g0009 | 591 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 128 | 589 | IPR045147 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER) | |
Cam10g0009 | 591 | SUPERFAMILY | HSP20-like chaperones | 502 | 587 | IPR008978 | - | |
Cam10g0009 | 591 | MobiDBLite | consensus disorder prediction | 395 | 418 | - | - | |
Cam10g0009 | 591 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cam10g0009 | 591 | MobiDBLite | consensus disorder prediction | 172 | 192 | - | - | |
Cam10g0009 | 591 | ProSiteProfiles | ARID domain profile. | 297 | 388 | IPR001606 | GO:0003677(InterPro) | |
Cam10g0009 | 591 | SMART | bright_3 | 298 | 389 | IPR001606 | GO:0003677(InterPro) | |
Cam10g0009 | 591 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 491 | 591 | IPR002068 | - | |
Cam10g0009 | 591 | CDD | ARID | 302 | 384 | - | - | |
Cam10g0009 | 591 | MobiDBLite | consensus disorder prediction | 172 | 248 | - | - | |
Cam10g0009 | 591 | Pfam | ARID/BRIGHT DNA binding domain | 300 | 384 | IPR001606 | GO:0003677(InterPro) | |
Cam10g0009 | 591 | FunFam | AT-rich interactive domain-containing protein 3 | 297 | 396 | - | - | |
Cam10g0009 | 591 | FunFam | AT-rich interactive domain-containing protein 3 | 483 | 591 | - | - | |
Cam10g0009 | 591 | MobiDBLite | consensus disorder prediction | 395 | 412 | - | - | |
Cam10g0009 | 591 | MobiDBLite | consensus disorder prediction | 115 | 136 | - | - | |
Cam10g0009 | 591 | SMART | ARID_2 | 294 | 384 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52669 | PF00011 | HSP20 | 1.00E-05 | CL0190 | Cam | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0009 | - | - | - | 0.0 |