Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0009 ATGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTCTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCTCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCGGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1776 44.54 MRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITSKQQFLFPNIVLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGSDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1745229 1752778 + CaPI482276_10g000090.1 Cam10g0009 136672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0009 591 Pfam Hsp20/alpha crystallin family 508 588 IPR002068 -
Cam10g0009 591 Gene3D - 297 395 IPR036431 GO:0003677(InterPro)
Cam10g0009 591 Gene3D - 487 591 IPR008978 -
Cam10g0009 591 MobiDBLite consensus disorder prediction 1 33 - -
Cam10g0009 591 SUPERFAMILY ARID-like 291 398 IPR036431 GO:0003677(InterPro)
Cam10g0009 591 CDD ACD_sHsps_p23-like 510 586 - -
Cam10g0009 591 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 128 589 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cam10g0009 591 SUPERFAMILY HSP20-like chaperones 502 587 IPR008978 -
Cam10g0009 591 MobiDBLite consensus disorder prediction 395 418 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 1 41 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 172 192 - -
Cam10g0009 591 ProSiteProfiles ARID domain profile. 297 388 IPR001606 GO:0003677(InterPro)
Cam10g0009 591 SMART bright_3 298 389 IPR001606 GO:0003677(InterPro)
Cam10g0009 591 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 491 591 IPR002068 -
Cam10g0009 591 CDD ARID 302 384 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 172 248 - -
Cam10g0009 591 Pfam ARID/BRIGHT DNA binding domain 300 384 IPR001606 GO:0003677(InterPro)
Cam10g0009 591 FunFam AT-rich interactive domain-containing protein 3 297 396 - -
Cam10g0009 591 FunFam AT-rich interactive domain-containing protein 3 483 591 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 395 412 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 115 136 - -
Cam10g0009 591 SMART ARID_2 294 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0009 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g0806 . 64 415 ARID Transcription Factor Family AT1G04880 58.2 1.4e-106 383.6
Cam10g0009 . 289 559 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cam05g1700 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.3e-111 397.9
Cam10g0009 . 268 589 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cam07g1127 . 1 762 ARID Transcription Factor Family AT3G43240 59.3 8.9e-260 893.3
Cam09g0131 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 4.1e-257 884.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52669 PF00011 HSP20 1.00E-05 CL0190 Cam TR