Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0009 ATGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTCTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCTCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCGGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1776 44.54 MRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITSKQQFLFPNIVLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGSDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1745229 1752778 + CaPI482276_10g000090.1 Cam10g0009 136672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0009 591 Pfam Hsp20/alpha crystallin family 508 588 IPR002068 -
Cam10g0009 591 Gene3D - 297 395 IPR036431 GO:0003677(InterPro)
Cam10g0009 591 Gene3D - 487 591 IPR008978 -
Cam10g0009 591 MobiDBLite consensus disorder prediction 1 33 - -
Cam10g0009 591 SUPERFAMILY ARID-like 291 398 IPR036431 GO:0003677(InterPro)
Cam10g0009 591 CDD ACD_sHsps_p23-like 510 586 - -
Cam10g0009 591 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 128 589 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cam10g0009 591 SUPERFAMILY HSP20-like chaperones 502 587 IPR008978 -
Cam10g0009 591 MobiDBLite consensus disorder prediction 395 418 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 1 41 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 172 192 - -
Cam10g0009 591 ProSiteProfiles ARID domain profile. 297 388 IPR001606 GO:0003677(InterPro)
Cam10g0009 591 SMART bright_3 298 389 IPR001606 GO:0003677(InterPro)
Cam10g0009 591 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 491 591 IPR002068 -
Cam10g0009 591 CDD ARID 302 384 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 172 248 - -
Cam10g0009 591 Pfam ARID/BRIGHT DNA binding domain 300 384 IPR001606 GO:0003677(InterPro)
Cam10g0009 591 FunFam AT-rich interactive domain-containing protein 3 297 396 - -
Cam10g0009 591 FunFam AT-rich interactive domain-containing protein 3 483 591 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 395 412 - -
Cam10g0009 591 MobiDBLite consensus disorder prediction 115 136 - -
Cam10g0009 591 SMART ARID_2 294 384 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52669 PF00011 HSP20 1.00E-05 CL0190 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0009 - - - 0.0