Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0010 ATGTCGTCGAACCATTCGGATTTGGAATCTTCAGCTTTTGATACTCAAACTTCGTCCAATCCGATTGCTCCCTTGGATCATCTTCCCTCCACCTCCTCCACTCTCTCTGAATCTGAAGAAAATCCCTGCACATCATCTTCGCCTTCCTCCACTCCACCTCCGATTCACCTACCTCTCTCTTGGCCTACCGATGCCACCCTTTCCCTCCAATGGATACACCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCCAGTTTCCTTCCGTCCTTCCCGTCTCCGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCCAAGACTCAGCCGCCAGCAGCGACTCGACTGTAGTCGTCGTCGGAGACATCCACGGCCAATTTCATGATCTCCTCTTTCTTCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGCTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAACCAAGTACGGAGACAAGGGTAAGCATGTATATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTTTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCGTCTAAAAGGTCGAAAGGGAAAAAAAATCGTAGGATAATCTTAAATCCCGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCGGGCGATGTGTTGTGGTCTGATCCCTCGATGAATCCTGGTCTCTCCCCAAATAAAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCAATCTGAAGCTAATTATTAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGCAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCAGGGAAACTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCAACTGAGGAGAGATACAAAAACAAAGGTGCATATATTGTTCTAGAACCTCCGAATTTTGATGTTCCAATCATTCATAGTTTTGATGCCATTACTCCACGACCAAAGGTCAATGCATATTACGATTTTGAGGATGTAATTGATTCTGACGAAGAATTAGACTTGGCTTCAATGGCAACTGATCCATGA 1386 45.6 MSSNHSDLESSAFDTQTSSNPIAPLDHLPSTSSTLSESEENPCTSSSPSSTPPPIHLPLSWPTDATLSLQWIHHLIAAFDWSSKNLPPSQFPSVLPVSVFDTLILTASKILHKEPNCLRILQDSAASSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNKERGIGLLWGPDCTEEFLKKFNLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFDAITPRPKVNAYYDFEDVIDSDEELDLASMATDP 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1753465 1764977 - CaPI482276_10g000100.1 Cam10g0010 136673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0010 461 ProSitePatterns Serine/threonine specific protein phosphatases signature. 195 200 IPR006186 GO:0016787(InterPro)
Cam10g0010 461 CDD MPP_PP7 61 441 IPR041754 -
Cam10g0010 461 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 34 453 IPR051134 -
Cam10g0010 461 FunFam Serine/threonine-protein phosphatase 79 455 - -
Cam10g0010 461 SUPERFAMILY Metallo-dependent phosphatases 92 433 IPR029052 -
Cam10g0010 461 MobiDBLite consensus disorder prediction 1 57 - -
Cam10g0010 461 MobiDBLite consensus disorder prediction 1 46 - -
Cam10g0010 461 Pfam Calcineurin-like phosphoesterase 131 357 IPR004843 GO:0016787(InterPro)
Cam10g0010 461 Gene3D - 89 449 IPR029052 -
Cam10g0010 461 SMART pp2a_7 95 431 IPR006186 GO:0016787(InterPro)
Cam10g0010 461 PRINTS Serine/threonine phosphatase family signature 194 218 IPR006186 GO:0016787(InterPro)
Cam10g0010 461 PRINTS Serine/threonine phosphatase family signature 131 158 IPR006186 GO:0016787(InterPro)
Cam10g0010 461 PRINTS Serine/threonine phosphatase family signature 231 257 IPR006186 GO:0016787(InterPro)
Cam10g0010 461 PRINTS Serine/threonine phosphatase family signature 385 401 IPR006186 GO:0016787(InterPro)
Cam10g0010 461 PRINTS Serine/threonine phosphatase family signature 161 188 IPR006186 GO:0016787(InterPro)
Cam10g0010 461 PRINTS Serine/threonine phosphatase family signature 291 318 IPR006186 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2042 Cam-Chr9:34960670 Cam10g0010 Cam-Chr10:1753465 1.10E-113 dispersed
Cam10g0010 Cam-Chr10:1753465 Cam11g1310 Cam-Chr11:25847839 2.80E-30 dispersed
Cam10g0010 Cam-Chr10:1753465 Cam09g2255 Cam-Chr9:37113115 1.80E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0010 K04460 - csv:116402510 821.617