Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0013 ATGACTCGCTATATCAGAGCTCTCGCCGCGAATACTTCGTCGGCACCGCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCAGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGCCGTGGGGGTGGAAGTGTTGGAAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCACAGTGCGGACATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGGGGTCCCACTCCTCATGTCCTTCTTGCCGTCAGATTCTGGTAGTGGCGAGATGCCAGAAGTGCGGGCAGTTTCCGGCCGTCGTGCAAGGCGGCGCTGCTCACAACAACGAAGAAGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA 546 58.42 MTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSVGNQASANRGLKKKILQSLPKFRYKSTGGEGKIAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEEEEVEDNNRGLGFLP 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1787021 1787566 - CaPI482276_10g000130.1 Cam10g0013 136676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0013 181 SUPERFAMILY RING/U-box 76 144 - -
Cam10g0013 181 CDD RING-H2_EL5-like 95 138 - -
Cam10g0013 181 FunFam E3 ubiquitin-protein ligase ATL6 59 144 - -
Cam10g0013 181 MobiDBLite consensus disorder prediction 160 181 - -
Cam10g0013 181 SMART FANCL_C_2 92 146 - -
Cam10g0013 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 142 IPR013083 -
Cam10g0013 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 168 IPR052788 -
Cam10g0013 181 SMART ring_2 96 137 IPR001841 -
Cam10g0013 181 Pfam Ring finger domain 95 138 IPR001841 -
Cam10g0013 181 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0013 Cam-Chr10:1787021 Cam11g1908 Cam-Chr11:31567568 1.30E-42 dispersed
Cam10g0013 Cam-Chr10:1787021 Cam02g0072 Cam-Chr2:1822114 4.70E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0013 - - - 0.0