Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0030 ATGCCAGAGGAAACTCAGACACGTCAGCTCTCCTCCACCGCGATTATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCCCCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCGGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGGCAGGAAAGATTGAAACGCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA 885 47.68 MPEETQTRQLSSTAIMMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEQLAGKIETPENYSLYQQAEGYSMTERP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1951699 1955651 + CaPI482276_10g000300.1 Cam10g0030 136693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0030 294 CDD homeodomain 115 177 IPR001356 GO:0003677(InterPro)
Cam10g0030 294 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
Cam10g0030 294 Gene3D - 117 181 - -
Cam10g0030 294 PANTHER WUSCHEL-RELATED HOMEOBOX 13 42 291 IPR044559 GO:0003700(InterPro)
Cam10g0030 294 MobiDBLite consensus disorder prediction 173 216 - -
Cam10g0030 294 Pfam Homeodomain 115 175 IPR001356 GO:0003677(InterPro)
Cam10g0030 294 ProSiteProfiles 'Homeobox' domain profile. 111 176 IPR001356 GO:0003677(InterPro)
Cam10g0030 294 MobiDBLite consensus disorder prediction 190 205 - -
Cam10g0030 294 SMART HOX_1 113 180 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0030 Cam-Chr10:1951699 Cam11g1897 Cam-Chr11:31501734 1.70E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52671 PF00046 Homeodomain 9.70E-19 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0030 - - - 0.0