Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0041 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTCCTCCTCGTCCCATGTGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATCCAGCAATCCAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTCACACATAAGAGATTACTTCAATTGGCTCTGGACCCTGCTAACCGACCTGTATTTGAAATCCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCTTCCATTTCAGGGCAGCAAGTACGGTGTTGAAGATAGGGACAGTGCCCCAAATGTGACACCCTGTTTCTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCCCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCAGAAAAGCAGCCCAGTCCTGCTTTGGGTAAGGATAACCAGAATAGAGTTGAATCTTTCCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATTTGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGAAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATTGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTCTACTTAAAGTAGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGCGTGGTCCAGAAGAGACAGCGGCCTACGATACCAAAGAATGTCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCAAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTTGAAAACAACGGGGAAAATCAACGCAAGAAGGACAAATTATCTGCTTTGAAGGAGCAATCTTCAACAATCAGACTCTTCACCGTATCCGTTCAGAAGCTGGCGAGCACGAACCCGAACCTGCAAACGAACCAATGCATGCATGAACTGAAGAGCTATGCGTGCCTGCCTCCTCGCGCACACCCCTCGAGCCAGCGCTTGCAGCTTCACCAAGCTTCTTAG 1878 44.2 MPIEDDVESCGSRATDSSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLALDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEALPFQGSKYGVEDRDSAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPSPALGKDNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRQRPTIPKNVHPVLAELLERCWRHDPTKRPNFSEILEILKQIAEQVENNGENQRKKDKLSALKEQSSTIRLFTVSVQKLASTNPNLQTNQCMHELKSYACLPPRAHPSSQRLQLHQAS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2046164 2054081 - CaPI482276_10g000410.1 Cam10g0041 136704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0041 625 SUPERFAMILY Protein kinase-like (PK-like) 275 546 IPR011009 -
Cam10g0041 625 Coils Coil 543 563 - -
Cam10g0041 625 CDD ACT_TyrKc 182 249 - -
Cam10g0041 625 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524(InterPro)
Cam10g0041 625 PANTHER SERINE-THREONINE PROTEIN KINASE 134 550 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam10g0041 625 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Cam10g0041 625 FunFam serine/threonine-protein kinase HT1 376 568 - -
Cam10g0041 625 SMART serkin_6 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 Coils Coil 234 254 - -
Cam10g0041 625 FunFam Serine/threonine-protein kinase isoform 1 287 375 - -
Cam10g0041 625 SUPERFAMILY ACT-like 182 247 IPR045865 -
Cam10g0041 625 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 CDD STKc_MAP3K-like 303 546 - -
Cam10g0041 625 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Cam10g0041 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 MobiDBLite consensus disorder prediction 134 153 - -
Cam10g0041 625 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g0041 625 MobiDBLite consensus disorder prediction 1 27 - -
Cam10g0041 625 Gene3D Transferase(Phosphotransferase) domain 1 376 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0405 Cam-Chr2:4785782 Cam10g0041 Cam-Chr10:2046164 2.30E-223 dispersed
Cam05g1704 Cam-Chr5:25378121 Cam10g0041 Cam-Chr10:2046164 8.40E-181 dispersed
Cam05g1730 Cam-Chr5:25840596 Cam10g0041 Cam-Chr10:2046164 1.10E-45 dispersed
Cam08g1128 Cam-Chr8:17610207 Cam10g0041 Cam-Chr10:2046164 1.60E-137 dispersed
Cam10g0041 Cam-Chr10:2046164 Cam11g1142 Cam-Chr11:22404977 3.80E-70 dispersed
Cam10g0041 Cam-Chr10:2046164 Cam01g2212 Cam-Chr1:34632598 3.20E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85469 PF07714 PK_Tyr_Ser-Thr 2.90E-75 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0041 - - - 0.0