Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0047 ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCATCTTCATCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCGGATGAATCAGGGATAGGCTGTCTCCTTTATCTGATTGACGTCATTGCTAGCCTCCTCAGTGGACGTTTAGTTCGAGAACGCATCGGTCCGGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAGCTTTGATGACATTCCGAACATCTTTGACACCAGCAGTGCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTCTATGCAGAAGGGATCTGTAA 708 45.34 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2097788 2099123 + CaPI482276_10g000470.1 Cam10g0047 136710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0047 235 SUPERFAMILY RING/U-box 176 235 - -
Cam10g0047 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Cam10g0047 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Cam10g0047 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Cam10g0047 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Cam10g0047 235 CDD RING-H2_NIPL1-like 189 232 - -
Cam10g0047 235 SMART ring_2 190 231 IPR001841 -
Cam10g0047 235 Pfam Ring finger domain 190 232 IPR001841 -
Cam10g0047 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0047 Cam-Chr10:2097788 Cam11g1292 Cam-Chr11:25498394 3.00E-12 dispersed
Cam10g0047 Cam-Chr10:2097788 Cam09g2041 Cam-Chr9:34953759 1.20E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0047 - - - 0.0