Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0047 | ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCATCTTCATCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCGGATGAATCAGGGATAGGCTGTCTCCTTTATCTGATTGACGTCATTGCTAGCCTCCTCAGTGGACGTTTAGTTCGAGAACGCATCGGTCCGGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAGCTTTGATGACATTCCGAACATCTTTGACACCAGCAGTGCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTCTATGCAGAAGGGATCTGTAA | 708 | 45.34 | MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2097788 | 2099123 | + | CaPI482276_10g000470.1 | Cam10g0047 | 136710 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0047 | 235 | SUPERFAMILY | RING/U-box | 176 | 235 | - | - | |
Cam10g0047 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
Cam10g0047 | 235 | FunFam | NEP1-interacting protein-like 1 | 150 | 235 | - | - | |
Cam10g0047 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 21 | 234 | IPR044523 | - | |
Cam10g0047 | 235 | Pfam | YMGG-like Gly-zipper | 50 | 85 | IPR027367 | - | |
Cam10g0047 | 235 | CDD | RING-H2_NIPL1-like | 189 | 232 | - | - | |
Cam10g0047 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
Cam10g0047 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
Cam10g0047 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 235 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam10g0047 | Cam-Chr10:2097788 | Cam11g1292 | Cam-Chr11:25498394 | 3.00E-12 | dispersed | |
Cam10g0047 | Cam-Chr10:2097788 | Cam09g2041 | Cam-Chr9:34953759 | 1.20E-13 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0047 | - | - | - | 0.0 |