Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0048 ATGTCTCTTGATTCTGTGGCTTATCCTTTGATTGTTGGGTCTGCAGTGAAGGATTTTGAGCCATGTGCCGATCATCTCTTGCGTCGTCGGGGCGGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCATCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGTCAGCTCGAGTCTGGTCCCTTGAGCTTGCTCGAGTCTGGACCCTATGGAACCTTTATAGGAATATACGATGGCCATGGTGGCCCTGAGACATCGCGATTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTCGCCACAGAAGAAAAGGAAATGTCAGTTAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTATTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGCTGTGATTTGTAATGGAAAACTCTACATTGCCAATCTTGGTGATTCCCGAGCTGTGTTGGGAAGGTTAGTTCGGTCCACGGGGGAAGTTCTTCCCATTCAGCTGTCATCGGAGCATAATGTAAGCATACAGTCAGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCACATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTTTGAGCTCAGAACCAGCAGTCTCTGTGCACGAACTAGATACAAATGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCGGATTTGAAGAAGATTGACCGTGGAGTTCGGCGCCACTTTCACGACGACACAACGGTGATAGTCGTGTTTCTTGGATCGAGCAGAGGGAGCAGCCCTGGTACAGCAGGGGAAGGGAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAATGAACCTATCTGCAAAATCTCTAGCACCTTGA 1197 47.95 MSLDSVAYPLIVGSAVKDFEPCADHLLRRRGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFIGIYDGHGGPETSRFICDNLFQHLKVFATEEKEMSVNVIKKAFQATEEGFLSIVTKQWPMNPQIAAVGSCCLVAVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDSHIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAVSVHELDTNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSRGSSPGTAGEGSPVLSVRGGGMNLSAKSLAP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2101953 2104710 - CaPI482276_10g000480.1 Cam10g0048 136711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0048 398 PANTHER PROTEIN PHOSPHATASE 49 363 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam10g0048 398 Pfam Protein phosphatase 2C 89 333 IPR001932 -
Cam10g0048 398 SMART PP2C_4 48 362 IPR001932 -
Cam10g0048 398 ProSitePatterns PPM-type phosphatase domain signature. 90 98 IPR000222 GO:0043169(InterPro)
Cam10g0048 398 Gene3D - 46 369 IPR036457 -
Cam10g0048 398 SUPERFAMILY PP2C-like 68 365 IPR036457 -
Cam10g0048 398 CDD PP2Cc 88 364 IPR001932 -
Cam10g0048 398 MobiDBLite consensus disorder prediction 368 387 - -
Cam10g0048 398 FunFam Phosphatase 2C family protein 45 372 - -
Cam10g0048 398 ProSiteProfiles PPM-type phosphatase domain profile. 56 364 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0416 Cam-Chr2:4896996 Cam10g0048 Cam-Chr10:2101953 2.00E-154 dispersed
Cam02g1259 Cam-Chr2:24827992 Cam10g0048 Cam-Chr10:2101953 4.00E-153 dispersed
Cam02g1427 Cam-Chr2:27038249 Cam10g0048 Cam-Chr10:2101953 4.00E-135 dispersed
Cam06g0445 Cam-Chr6:6588004 Cam10g0048 Cam-Chr10:2101953 2.40E-112 dispersed
Cam10g0048 Cam-Chr10:2101953 Cam10g2036 Cam-Chr10:34200090 2.80E-127 dispersed
Cam05g1072 Cam-Chr5:9793050 Cam10g0048 Cam-Chr10:2101953 1.90E-14 transposed
Cam01g2107 Cam-Chr1:34044203 Cam10g0048 Cam-Chr10:2101953 3.50E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0048 K01102 - csv:101220137 710.679