Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0064 ATGGCAGAAGAGGATACCCCATCTGAAAGTTCTGAACCTTCTTCTTCTTCTTCAGCTCTCACCTCTTCAATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAACACAGCCCCTCGTAGCAGAAGAATCTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACGATACTCACATGGCATTTCACGAAGAGCTACACAGCACAGTCTCTAGACAGCTTAGCGTATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATTTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGGTTTGTCCAGGCATTTCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCATATAATATCAATCGGCTTTCTTCGGGTGAAGGGTGGTCGGAGCCACCCATACATGGCAATGTTTCTGCAAAATGGTTCCGGGAACCGCTTGATCCTATTAGCGGTGAGAAGATCGGGAAAGCAAGGCAAATCCCACCTGAGGACTTGATTAATATTGCTGGCATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCAGCTCTACCTGTTTCCGATGCTTCAAATGAAAGCATCGTTGCAGTGGTGGGTGTTACGACCGCCCTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGCGGTCCAAAGCTTATGATGGCTGCCGATTCCCAGGATGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATAAGCAATATTACATCGACTCATTTTTCCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGACGAGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACACCAATGGCTGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCGACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATACTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACAACATGCCAAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAACTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAAACGTCAAATACTCTTAAAGAAACGGGAAAGTTCTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACGCATGGTGGCACGGGTCTTGGACTATGCATTGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGCAGACTCCACAGATCATCACTGTCAGTTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAAAAGTTCTGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCTTGGATGTTAAACCATGATACATCCAACGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCAAAGATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAAAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGAAATCCTAACTCTCAGTGTGCGACATTTGAAGTCAGAGACAGCCAAGAAGAAACGACACCGAAACCATGTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCGATTGAGAGTAATGTGAGGACGGGCGATCAGTGTGGCACGAGACAAAATTCATCAATGCCTCAATGTCAAAGTTCTGAGTCCAATGGACAGAACTTAGGATGCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAAGAACGTTCAAGGTAAGAAATCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCACGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGGTCAGTGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGCAGGAACGAGCCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCCTACCTAACAAAGCCAATTGACTATAAGCTGATGTTTCTAACTAAACAACAGGAGAAGAGAAGGCCTTTAAGGGTCCGAACCGGTGTGTGTATTCAAGAGATGGGTTTAGTGCTGAAGAGTGTGCCAATTTGGATAAGGAATTTGCACAAAATGATGCAAATTCTATGTTTGATGGCAGCACCAGATAGAGATGGTTAG 3798 42.39 MAEEDTPSESSEPSSSSSALTSSMSTPLRKVFCRISGLATSLRRNTAPRSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYNINRLSSGEGWSEPPIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAADSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDKQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDNMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKETGKFCMDQKKSRFPNRTKMKQQGDHTKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPADSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKIGLFTLEASEWNELTLILQELFQAKSSENKKGFSPQDSLGETLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNPNSQCATFEVRDSQEETTPKPCQSPFLPINNSLVELTHVHSIESNVRTGDQCGTRQNSSMPQCQSSESNGQNLGCNYPKSQGESHSKNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAFGDGLQAVEALTAMVSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEAGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMFLTKQQEKRRPLRVRTGVCIQEMGLVLKSVPIWIRNLHKMMQILCLMAAPDRDG 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2219943 2225737 - CaPI482276_10g000640.1 Cam10g0064 136727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0064 1265 MobiDBLite consensus disorder prediction 7 23 - -
Cam10g0064 1265 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam10g0064 1265 Gene3D - 574 773 IPR036890 -
Cam10g0064 1265 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam10g0064 1265 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam10g0064 1265 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam10g0064 1265 Pfam Response regulator receiver domain 1090 1209 IPR001789 GO:0000160(InterPro)
Cam10g0064 1265 CDD REC_hyHK_CKI1_RcsC-like 1090 1212 - -
Cam10g0064 1265 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam10g0064 1265 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 768 IPR003594 -
Cam10g0064 1265 Gene3D - 1066 1222 - -
Cam10g0064 1265 ProSiteProfiles Response regulatory domain profile. 1089 1219 IPR001789 GO:0000160(InterPro)
Cam10g0064 1265 SMART HisKA_10 506 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam10g0064 1265 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 768 IPR036890 -
Cam10g0064 1265 SMART REC_2 1088 1214 IPR001789 GO:0000160(InterPro)
Cam10g0064 1265 SMART HKATPase_4 619 771 IPR003594 -
Cam10g0064 1265 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 777 IPR050736 -
Cam10g0064 1265 MobiDBLite consensus disorder prediction 1038 1078 - -
Cam10g0064 1265 SUPERFAMILY CheY-like 1086 1220 IPR011006 -
Cam10g0064 1265 Gene3D - 494 573 - -
Cam10g0064 1265 MobiDBLite consensus disorder prediction 1 23 - -
Cam10g0064 1265 MobiDBLite consensus disorder prediction 1038 1079 - -
Cam10g0064 1265 CDD HisKA 507 568 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam10g0064 1265 FunFam Histidine kinase 1-like protein 494 573 - -
Cam10g0064 1265 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0287 Cam-Chr2:3642023 Cam10g0064 Cam-Chr10:2219943 1.20E-40 dispersed
Cam02g1552 Cam-Chr2:28480805 Cam10g0064 Cam-Chr10:2219943 1.10E-67 dispersed
Cam10g0064 Cam-Chr10:2219943 Cam11g0114 Cam-Chr11:2783103 2.60E-41 dispersed
Cam10g0064 Cam-Chr10:2219943 Cam02g0887 Cam-Chr2:12113436 5.90E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0064 . 5 1214 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1442.2
Cam11g0114 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cam01g0683 . 24 971 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1298.5
Cam02g0287 . 279 1231 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Cam06g0005 . 100 1026 Histidine Kinase Gene Family AT2G01830 53.8 4.3e-268 921.4
Cam02g0887 . 304 1248 Histidine Kinase Gene Family AT2G01830 51.7 8.5e-264 907.1
Cam05g1764 . 1 997 Histidine Kinase Gene Family AT5G10720 57.2 3.2e-291 998.0
Cam08g1356 . 150 1269 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Cam08g1359 . 6 1137 Histidine Kinase Gene Family AT1G09570 70.0 0.0e+00 1577.0
Cam02g0302 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1202.2
Cam05g0774 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.9
Cam05g0774 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Cam03g0721 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.6 0.0e+00 1240.7
Cam08g1356 . 170 1203 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1089.3
Cam02g0302 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1075.1
Cam02g0302 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1361.3
Cam05g0774 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1152.5
Cam08g1356 . 158 1263 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1116.3
Cam05g0774 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.3
Cam03g0721 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.8 0.0e+00 1280.4
Cam08g1356 . 157 1264 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1138.3
Cam02g0302 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1115.5
Cam03g0721 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1370.9
Cam05g0774 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1271.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52673 PF02518 HATPase_c 7.10E-23 CL0025 Cam TR