Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0066 ATGGGAGAAGAGGGACGATCCTTGGCCGTTACCCCCACTTGGGCTTTCGCCACAGTGGTTACTCTTATGGTTTCTCTTGGATTCTTCTTCCAAGGCACGTTGAAACGGACCAAAAAGTGGTTGAATAGGACGAAGAGAAAATCGTTACTCGCCGCGTTGGATAAGATTAAAGAAGAGCTGATGCTCTTTGGACTTCTTTCGTTGTTGATGGGTCACTGGATTGTTTTTGTTGCAAGAATTTGTGTTAAGTCATCTGTCTTGAGCAGCCGTTTCTATCCTTGTGCGTTGGAGATTGATCTGAAACGAGTTAGACATATTTCTATTGCAAGTGAAAACTTGAACAGTTCTGTTCCAAGGGAGCATAATAACGATGGGATACGAGAGTATTGTCCTGAGGGTCGTGAATCATTTGCTTCATATGAAAGTTTAGAGCAGCTTCATCGATTAATTTTCGTTCTTGGTGTCACCCATGTTTCATATAGCTTCATTGCTATTGCCCTGGCTATGATTAAGATATATGGGTGGAGAGCGTGGGAAAATGAGGCTAAGGCTTTGGCCATTCAGAATGCTCAAGAATCTGTACAAGCATCATCAACTGGACCAAACATAAGGCGACTATCAACTTTTGTCTTTCACCATACTTCTCATCCATGGAGTCAGCATAGAGTCCTTGTTTGGCTGCTTTGTTTCAGCCGCCAGTTTTGGAGTTCTATCAATCGAGCTGATTACATGGCTTTGCGGTTGGGATTTATCAGTACTCATGAACTTCCTATATCATATGACTTCCATAATTATATGCTTCGAAGCATGGACGATGAATTTCGCGATATGGTTGGTATAAGCGTGCCACTCTGGATATATGCCATTGCTTGCATCTTCCTCAACTTTCATGGAAGCAACATTTACTTTTGGCTTTCCTTTCTCCCTGCAATTTTGATTCTGCTAATCGGGACAAAACTGCACCGGGTAGTTGTAAAGTTGGCTGTAGAAGTTGTGGATACATCTCGAAGGGGATATTACCGTTTTAACTTGAGGGATGAACTGTTTTGGTTTGGGAAGCCTAAGCTTCTTTTATGGTCGATACAATTTATATCCTTCCAGAATGCTTTTGAGATGGCTACATTTATTTGGTCCCTGTGGGAAATTAAGGAACCTTCTTGTTTCATGGACAACGTAACATACGTAGGTATCCGCTTGGCCTTTGGGGTTATCACTCAGTTTTGGTGTAGCTTCATTACATTCCCACTCTATGTTATAGTAACTCAGATGGGGTCGAAGGTCAAGAAATCACTAGTGTCGGAGAATGTCCGAAACTCGCTTCATCAATGGAAAAGAAGAGTGAAGGCAAGGCCGGGTGTTTCTTCCTCAGTTGCACTTGTGGGTGCAACATCACTTTCATCCTCCGTTTGTACAATGGATGATGATGGTCAGATAATCGACGACTTTACTGTGAACTGCTTGGAAGGAAGCACATCGAACACCGCCCAATACACACATTTCTCCCAGGTACTTCAGCAAGCTTCGTCGGACGACACGGACGTACAAATATCTCCTACTTTTGAGCTTCTGTTTATTGAAACTGAAGGGATTCCTTGTGTTGAGAGTTCCAGACCTTCCGGCTTCTGCTGCAAGAAACCTCTCCCTTCCTCTTCGATTCTCTCTTACTCCTTCGATTTCTTGGGTGTTTTCAATCTCTCAACAATGGTGCTCGAGGCTACAATGATCTGCATCGACAATTCCGAATGGATGAGGAACGGCGATTATGCTCCTTCCAGATTCCAAGCCCAAGCCGATGCCGTTAATCTCATTTGCGGAGCTAAAACCCAGTCTAACCCGGAGAATACAGTAGGAGTTCTTACAATGGCCGGAAAAGGGGTTCGGGTTTTGGTAACTCCTACAAGTGATCTTGGCAAGATTCTAGCGTGCATGCACGGTTTAGAGATAGGTGGAGAGACAAACTTGGCTGCTGGGATTCAGGTGGCTCAGTTGGCTCTGAAGCATCGTCAAAACAAGAAGCAACAACAAAGAATTATTGTTTTTGCAGGAAGTCCTGCCAATCATGAAAAGAAGTTGTTGGAGATGATTGGAAAGAAATTAAAAAAGAACAATGTGGCACTAGATATTATTGATTTTGGTGAAGAAGATGATGGTAAGCCAGAGAAGCTGGAAGCCCTTCTTTCGGCTGTAAATAGTAACGACTCCAGTCACATTGTTCATGTTCCCTCAGGTCCAAATGCTCTTTCTGATGTACTTATTAGTACTCCAATCTTCACTGGTGATGGGGAGGGAGGAAGTGGATTTGCTGCAGCTGCTGCTGCAGCTTCAGCTGGTGGGGCCGGTTTTGATTTTGGTGTGGATCCCAACTTAGACCCTGAACTAGCACTTGCACTTCGAGTGTCAATGGAAGAGGAAAGGGCCAGACAGGAGGCAGCTGCTAAGAGAGCTGCTGAGGAGACTTCAAAGCAGGAAAAAGGAGGGGAACAGCCATCTGGCTCACAGGATACAACTATGAATGAACGTGCTAGTGCTGAATCTTCTGATGCTCAGAAGACAAATGATCCAATGGAGGATGAAAATGCTCTGTTACAACAAGCCCTTGCAATGTCAATGGAAGATCCTGCCTCAAGTCAGGACCTGCGGGATACAGAAATGTCAGATGCAGCAATGGATCCAGAGTTGGCTCTTGCTCTTCAGTTGTCCGTGCAGGAGGATGCTAAAGACTCAACAAGCCAACCTGATATGAGTAAATTACTGGCAGACCAGTCATTTGTATCGTCCATTCTTGCATCGCTTCCAGGGGTTGATCCAAATGATCCATCAGTTAAAGATTTACTGGCTTCCATGCAAAGTCAGTCAAAGCCAGAGGACAAGAAGAATGAAGAAAAAGGCCCCAAGGAAGACGACGACAAATGA 2913 44.32 MGEEGRSLAVTPTWAFATVVTLMVSLGFFFQGTLKRTKKWLNRTKRKSLLAALDKIKEELMLFGLLSLLMGHWIVFVARICVKSSVLSSRFYPCALEIDLKRVRHISIASENLNSSVPREHNNDGIREYCPEGRESFASYESLEQLHRLIFVLGVTHVSYSFIAIALAMIKIYGWRAWENEAKALAIQNAQESVQASSTGPNIRRLSTFVFHHTSHPWSQHRVLVWLLCFSRQFWSSINRADYMALRLGFISTHELPISYDFHNYMLRSMDDEFRDMVGISVPLWIYAIACIFLNFHGSNIYFWLSFLPAILILLIGTKLHRVVVKLAVEVVDTSRRGYYRFNLRDELFWFGKPKLLLWSIQFISFQNAFEMATFIWSLWEIKEPSCFMDNVTYVGIRLAFGVITQFWCSFITFPLYVIVTQMGSKVKKSLVSENVRNSLHQWKRRVKARPGVSSSVALVGATSLSSSVCTMDDDGQIIDDFTVNCLEGSTSNTAQYTHFSQVLQQASSDDTDVQISPTFELLFIETEGIPCVESSRPSGFCCKKPLPSSSILSYSFDFLGVFNLSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGETNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPANHEKKLLEMIGKKLKKNNVALDIIDFGEEDDGKPEKLEALLSAVNSNDSSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGAGFDFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEETSKQEKGGEQPSGSQDTTMNERASAESSDAQKTNDPMEDENALLQQALAMSMEDPASSQDLRDTEMSDAAMDPELALALQLSVQEDAKDSTSQPDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSKPEDKKNEEKGPKEDDDK 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2239759 2250296 - CaPI482276_10g000660.1 Cam10g0066 136729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0066 970 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 857 876 IPR003903 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 869 891 - -
Cam10g0066 970 Coils Coil 798 818 - -
Cam10g0066 970 MobiDBLite consensus disorder prediction 806 824 - -
Cam10g0066 970 FunFam 26S proteasome regulatory subunit N10 786 871 - -
Cam10g0066 970 SUPERFAMILY vWA-like 571 741 IPR036465 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 953 970 - -
Cam10g0066 970 Gene3D - 786 871 - -
Cam10g0066 970 ProSiteProfiles VWFA domain profile. 572 756 IPR002035 -
Cam10g0066 970 FunFam 26S proteasome non-ATPase regulatory subunit 4 570 753 - -
Cam10g0066 970 Pfam von Willebrand factor type A domain 573 682 IPR002035 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 929 970 - -
Cam10g0066 970 Pfam Ubiquitin interaction motif 890 903 IPR003903 -
Cam10g0066 970 Pfam Ubiquitin interaction motif 857 872 IPR003903 -
Cam10g0066 970 Pfam Ubiquitin interaction motif 790 803 IPR003903 -
Cam10g0066 970 PANTHER MLO-LIKE PROTEIN 1 2 456 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cam10g0066 970 CDD VWA_26S_proteasome_subunit 568 755 - -
Cam10g0066 970 MobiDBLite consensus disorder prediction 806 855 - -
Cam10g0066 970 SMART uim 888 907 IPR003903 -
Cam10g0066 970 SMART uim 857 876 IPR003903 -
Cam10g0066 970 SMART uim 788 807 IPR003903 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 825 849 - -
Cam10g0066 970 Pfam Mlo family 5 457 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cam10g0066 970 SMART VWA_4 569 742 IPR002035 -
Cam10g0066 970 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 788 807 IPR003903 -
Cam10g0066 970 CDD PSMD4_RAZUL 910 956 IPR049590 -
Cam10g0066 970 Gene3D von Willebrand factor, type A domain 570 753 IPR036465 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1118 Cam-Chr5:10325147 Cam10g0066 Cam-Chr10:2239759 5.00E-138 dispersed
Cam09g1923 Cam-Chr9:33944687 Cam10g0066 Cam-Chr10:2239759 1.90E-102 dispersed
Cam10g0066 Cam-Chr10:2239759 Cam11g1837 Cam-Chr11:30900329 1.10E-105 dispersed
Cam01g2086 Cam-Chr1:33890388 Cam10g0066 Cam-Chr10:2239759 2.80E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0066 K08472 - csv:101217051 954.125