Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0066 ATGGGAGAAGAGGGACGATCCTTGGCCGTTACCCCCACTTGGGCTTTCGCCACAGTGGTTACTCTTATGGTTTCTCTTGGATTCTTCTTCCAAGGCACGTTGAAACGGACCAAAAAGTGGTTGAATAGGACGAAGAGAAAATCGTTACTCGCCGCGTTGGATAAGATTAAAGAAGAGCTGATGCTCTTTGGACTTCTTTCGTTGTTGATGGGTCACTGGATTGTTTTTGTTGCAAGAATTTGTGTTAAGTCATCTGTCTTGAGCAGCCGTTTCTATCCTTGTGCGTTGGAGATTGATCTGAAACGAGTTAGACATATTTCTATTGCAAGTGAAAACTTGAACAGTTCTGTTCCAAGGGAGCATAATAACGATGGGATACGAGAGTATTGTCCTGAGGGTCGTGAATCATTTGCTTCATATGAAAGTTTAGAGCAGCTTCATCGATTAATTTTCGTTCTTGGTGTCACCCATGTTTCATATAGCTTCATTGCTATTGCCCTGGCTATGATTAAGATATATGGGTGGAGAGCGTGGGAAAATGAGGCTAAGGCTTTGGCCATTCAGAATGCTCAAGAATCTGTACAAGCATCATCAACTGGACCAAACATAAGGCGACTATCAACTTTTGTCTTTCACCATACTTCTCATCCATGGAGTCAGCATAGAGTCCTTGTTTGGCTGCTTTGTTTCAGCCGCCAGTTTTGGAGTTCTATCAATCGAGCTGATTACATGGCTTTGCGGTTGGGATTTATCAGTACTCATGAACTTCCTATATCATATGACTTCCATAATTATATGCTTCGAAGCATGGACGATGAATTTCGCGATATGGTTGGTATAAGCGTGCCACTCTGGATATATGCCATTGCTTGCATCTTCCTCAACTTTCATGGAAGCAACATTTACTTTTGGCTTTCCTTTCTCCCTGCAATTTTGATTCTGCTAATCGGGACAAAACTGCACCGGGTAGTTGTAAAGTTGGCTGTAGAAGTTGTGGATACATCTCGAAGGGGATATTACCGTTTTAACTTGAGGGATGAACTGTTTTGGTTTGGGAAGCCTAAGCTTCTTTTATGGTCGATACAATTTATATCCTTCCAGAATGCTTTTGAGATGGCTACATTTATTTGGTCCCTGTGGGAAATTAAGGAACCTTCTTGTTTCATGGACAACGTAACATACGTAGGTATCCGCTTGGCCTTTGGGGTTATCACTCAGTTTTGGTGTAGCTTCATTACATTCCCACTCTATGTTATAGTAACTCAGATGGGGTCGAAGGTCAAGAAATCACTAGTGTCGGAGAATGTCCGAAACTCGCTTCATCAATGGAAAAGAAGAGTGAAGGCAAGGCCGGGTGTTTCTTCCTCAGTTGCACTTGTGGGTGCAACATCACTTTCATCCTCCGTTTGTACAATGGATGATGATGGTCAGATAATCGACGACTTTACTGTGAACTGCTTGGAAGGAAGCACATCGAACACCGCCCAATACACACATTTCTCCCAGGTACTTCAGCAAGCTTCGTCGGACGACACGGACGTACAAATATCTCCTACTTTTGAGCTTCTGTTTATTGAAACTGAAGGGATTCCTTGTGTTGAGAGTTCCAGACCTTCCGGCTTCTGCTGCAAGAAACCTCTCCCTTCCTCTTCGATTCTCTCTTACTCCTTCGATTTCTTGGGTGTTTTCAATCTCTCAACAATGGTGCTCGAGGCTACAATGATCTGCATCGACAATTCCGAATGGATGAGGAACGGCGATTATGCTCCTTCCAGATTCCAAGCCCAAGCCGATGCCGTTAATCTCATTTGCGGAGCTAAAACCCAGTCTAACCCGGAGAATACAGTAGGAGTTCTTACAATGGCCGGAAAAGGGGTTCGGGTTTTGGTAACTCCTACAAGTGATCTTGGCAAGATTCTAGCGTGCATGCACGGTTTAGAGATAGGTGGAGAGACAAACTTGGCTGCTGGGATTCAGGTGGCTCAGTTGGCTCTGAAGCATCGTCAAAACAAGAAGCAACAACAAAGAATTATTGTTTTTGCAGGAAGTCCTGCCAATCATGAAAAGAAGTTGTTGGAGATGATTGGAAAGAAATTAAAAAAGAACAATGTGGCACTAGATATTATTGATTTTGGTGAAGAAGATGATGGTAAGCCAGAGAAGCTGGAAGCCCTTCTTTCGGCTGTAAATAGTAACGACTCCAGTCACATTGTTCATGTTCCCTCAGGTCCAAATGCTCTTTCTGATGTACTTATTAGTACTCCAATCTTCACTGGTGATGGGGAGGGAGGAAGTGGATTTGCTGCAGCTGCTGCTGCAGCTTCAGCTGGTGGGGCCGGTTTTGATTTTGGTGTGGATCCCAACTTAGACCCTGAACTAGCACTTGCACTTCGAGTGTCAATGGAAGAGGAAAGGGCCAGACAGGAGGCAGCTGCTAAGAGAGCTGCTGAGGAGACTTCAAAGCAGGAAAAAGGAGGGGAACAGCCATCTGGCTCACAGGATACAACTATGAATGAACGTGCTAGTGCTGAATCTTCTGATGCTCAGAAGACAAATGATCCAATGGAGGATGAAAATGCTCTGTTACAACAAGCCCTTGCAATGTCAATGGAAGATCCTGCCTCAAGTCAGGACCTGCGGGATACAGAAATGTCAGATGCAGCAATGGATCCAGAGTTGGCTCTTGCTCTTCAGTTGTCCGTGCAGGAGGATGCTAAAGACTCAACAAGCCAACCTGATATGAGTAAATTACTGGCAGACCAGTCATTTGTATCGTCCATTCTTGCATCGCTTCCAGGGGTTGATCCAAATGATCCATCAGTTAAAGATTTACTGGCTTCCATGCAAAGTCAGTCAAAGCCAGAGGACAAGAAGAATGAAGAAAAAGGCCCCAAGGAAGACGACGACAAATGA 2913 44.32 MGEEGRSLAVTPTWAFATVVTLMVSLGFFFQGTLKRTKKWLNRTKRKSLLAALDKIKEELMLFGLLSLLMGHWIVFVARICVKSSVLSSRFYPCALEIDLKRVRHISIASENLNSSVPREHNNDGIREYCPEGRESFASYESLEQLHRLIFVLGVTHVSYSFIAIALAMIKIYGWRAWENEAKALAIQNAQESVQASSTGPNIRRLSTFVFHHTSHPWSQHRVLVWLLCFSRQFWSSINRADYMALRLGFISTHELPISYDFHNYMLRSMDDEFRDMVGISVPLWIYAIACIFLNFHGSNIYFWLSFLPAILILLIGTKLHRVVVKLAVEVVDTSRRGYYRFNLRDELFWFGKPKLLLWSIQFISFQNAFEMATFIWSLWEIKEPSCFMDNVTYVGIRLAFGVITQFWCSFITFPLYVIVTQMGSKVKKSLVSENVRNSLHQWKRRVKARPGVSSSVALVGATSLSSSVCTMDDDGQIIDDFTVNCLEGSTSNTAQYTHFSQVLQQASSDDTDVQISPTFELLFIETEGIPCVESSRPSGFCCKKPLPSSSILSYSFDFLGVFNLSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGETNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPANHEKKLLEMIGKKLKKNNVALDIIDFGEEDDGKPEKLEALLSAVNSNDSSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGAGFDFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEETSKQEKGGEQPSGSQDTTMNERASAESSDAQKTNDPMEDENALLQQALAMSMEDPASSQDLRDTEMSDAAMDPELALALQLSVQEDAKDSTSQPDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSKPEDKKNEEKGPKEDDDK 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2239759 2250296 - CaPI482276_10g000660.1 Cam10g0066 136729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0066 970 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 857 876 IPR003903 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 869 891 - -
Cam10g0066 970 Coils Coil 798 818 - -
Cam10g0066 970 MobiDBLite consensus disorder prediction 806 824 - -
Cam10g0066 970 FunFam 26S proteasome regulatory subunit N10 786 871 - -
Cam10g0066 970 SUPERFAMILY vWA-like 571 741 IPR036465 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 953 970 - -
Cam10g0066 970 Gene3D - 786 871 - -
Cam10g0066 970 ProSiteProfiles VWFA domain profile. 572 756 IPR002035 -
Cam10g0066 970 FunFam 26S proteasome non-ATPase regulatory subunit 4 570 753 - -
Cam10g0066 970 Pfam von Willebrand factor type A domain 573 682 IPR002035 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 929 970 - -
Cam10g0066 970 Pfam Ubiquitin interaction motif 890 903 IPR003903 -
Cam10g0066 970 Pfam Ubiquitin interaction motif 857 872 IPR003903 -
Cam10g0066 970 Pfam Ubiquitin interaction motif 790 803 IPR003903 -
Cam10g0066 970 PANTHER MLO-LIKE PROTEIN 1 2 456 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cam10g0066 970 CDD VWA_26S_proteasome_subunit 568 755 - -
Cam10g0066 970 MobiDBLite consensus disorder prediction 806 855 - -
Cam10g0066 970 SMART uim 888 907 IPR003903 -
Cam10g0066 970 SMART uim 857 876 IPR003903 -
Cam10g0066 970 SMART uim 788 807 IPR003903 -
Cam10g0066 970 MobiDBLite consensus disorder prediction 825 849 - -
Cam10g0066 970 Pfam Mlo family 5 457 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cam10g0066 970 SMART VWA_4 569 742 IPR002035 -
Cam10g0066 970 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 788 807 IPR003903 -
Cam10g0066 970 CDD PSMD4_RAZUL 910 956 IPR049590 -
Cam10g0066 970 Gene3D von Willebrand factor, type A domain 570 753 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0066 K08472 - - csv:101217051 954.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1118 Cam-Chr5:10325147 Cam10g0066 Cam-Chr10:2239759 5.00E-138 dispersed
Cam09g1923 Cam-Chr9:33944687 Cam10g0066 Cam-Chr10:2239759 1.90E-102 dispersed
Cam10g0066 Cam-Chr10:2239759 Cam11g1837 Cam-Chr11:30900329 1.10E-105 dispersed
Cam01g2086 Cam-Chr1:33890388 Cam10g0066 Cam-Chr10:2239759 2.80E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g1923 . 3 553 MLO family AT5G53760 69.7 1.0e-218 756.5
Cam11g1837 . 5 551 MLO family AT5G53760 69.2 3.6e-216 748.0
Cam05g1118 . 7 466 MLO family AT5G53760 51.1 2.6e-126 449.5
Cam09g1923 . 3 553 MLO family AT1G26700 68.0 6.7e-212 733.8
Cam11g1837 . 1 532 MLO family AT1G26700 68.3 1.8e-209 725.7
Cam03g0232 . 8 536 MLO family AT2G39200 63.8 1.2e-192 669.8
Cam05g2289 . 7 499 MLO family AT2G39200 67.7 8.0e-192 667.2
Cam02g2174 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Cam02g2174 . 1 416 MLO family AT1G61560 65.9 5.8e-160 560.8
Cam03g0232 . 1 416 MLO family AT1G61560 66.3 2.7e-157 552.0
Cam05g2289 . 7 408 MLO family AT1G61560 65.2 9.0e-153 537.0
Cam01g2152 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cam01g2152 . 18 490 MLO family AT2G17430 63.4 3.0e-172 602.1
Cam10g0014 . 29 490 MLO family AT2G17430 63.4 1.5e-160 563.1
Cam08g1381 . 4 480 MLO family AT2G17430 58.3 2.9e-151 532.3
Cam01g2152 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cam10g0014 . 5 574 MLO family AT2G17480 59.0 2.6e-177 619.0
Cam08g1381 . 11 465 MLO family AT2G17480 60.6 2.2e-152 536.2
Cam03g0232 . 8 463 MLO family AT2G17480 52.6 2.3e-125 446.4
Cam02g2174 . 8 463 MLO family AT2G17480 50.3 2.5e-124 443.0
Cam08g1381 . 1 381 MLO family AT1G42560 59.7 4.1e-128 454.9
Cam01g2152 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cam10g0014 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cam06g0173 . 6 419 MLO family AT4G24250 54.2 5.9e-117 417.9
Cam02g0035 . 10 421 MLO family AT4G24250 50.9 5.2e-113 404.8
Cam01g2152 . 8 387 MLO family AT5G65970 66.8 8.0e-145 510.8
Cam10g0014 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cam08g1381 . 7 381 MLO family AT5G65970 58.0 1.1e-120 430.6
Cam02g2174 . 2 381 MLO family AT5G65970 51.8 5.6e-106 381.7
Cam03g0232 . 2 381 MLO family AT5G65970 50.9 2.2e-102 369.8
Cam08g1381 . 2 543 MLO family AT2G33670 59.9 3.9e-174 608.2
Cam01g2152 . 20 470 MLO family AT2G33670 61.6 5.1e-158 554.7
Cam10g0014 . 29 471 MLO family AT2G33670 58.7 9.6e-141 497.3
Cam05g2289 . 64 525 MLO family AT1G11310 64.3 2.2e-169 592.4
Cam03g0232 . 63 506 MLO family AT1G11310 64.9 4.4e-165 578.2
Cam02g2174 . 63 520 MLO family AT1G11310 62.7 6.9e-163 570.9
Cam06g0173 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
Cam06g0173 . 1 508 MLO family AT4G02600 72.9 8.9e-214 740.0
Cam05g1118 . 3 560 MLO family AT1G11000 67.0 4.8e-213 737.6
Cam10g0066 . 1 494 MLO family AT1G11000 51.9 7.9e-131 464.5
Cam06g0173 . 1 508 MLO family AT4G02600 72.9 8.9e-214 740.0
Cam05g2289 . 64 525 MLO family AT1G11310 64.3 2.2e-169 592.4
Cam03g0232 . 63 506 MLO family AT1G11310 64.9 4.4e-165 578.2
Cam02g2174 . 63 520 MLO family AT1G11310 62.7 6.9e-163 570.9
Cam05g1118 . 3 560 MLO family AT1G11000 67.0 4.8e-213 737.6
Cam10g0066 . 1 494 MLO family AT1G11000 51.9 7.9e-131 464.5
Cam08g1381 . 2 543 MLO family AT2G33670 59.9 3.9e-174 608.2
Cam01g2152 . 20 470 MLO family AT2G33670 61.6 5.1e-158 554.7
Cam10g0014 . 29 471 MLO family AT2G33670 58.7 9.6e-141 497.3
Cam02g2174 . 1 416 MLO family AT1G61560 65.9 5.8e-160 560.8
Cam03g0232 . 1 416 MLO family AT1G61560 66.3 2.7e-157 552.0
Cam05g2289 . 7 408 MLO family AT1G61560 65.2 9.0e-153 537.0
Cam01g2152 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cam01g2152 . 18 490 MLO family AT2G17430 63.4 3.0e-172 602.1
Cam10g0014 . 29 490 MLO family AT2G17430 63.4 1.5e-160 563.1
Cam08g1381 . 4 480 MLO family AT2G17430 58.3 2.9e-151 532.3
Cam01g2152 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cam10g0014 . 5 574 MLO family AT2G17480 59.0 2.6e-177 619.0
Cam08g1381 . 11 465 MLO family AT2G17480 60.6 2.2e-152 536.2
Cam03g0232 . 8 463 MLO family AT2G17480 52.6 2.3e-125 446.4
Cam02g2174 . 8 463 MLO family AT2G17480 50.3 2.5e-124 443.0
Cam08g1381 . 1 381 MLO family AT1G42560 59.7 4.1e-128 454.9
Cam01g2152 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cam10g0014 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cam01g2152 . 8 387 MLO family AT5G65970 66.8 8.0e-145 510.8
Cam10g0014 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cam08g1381 . 7 381 MLO family AT5G65970 58.0 1.1e-120 430.6
Cam02g2174 . 2 381 MLO family AT5G65970 51.8 5.6e-106 381.7
Cam03g0232 . 2 381 MLO family AT5G65970 50.9 2.2e-102 369.8
Cam09g1923 . 3 553 MLO family AT5G53760 69.7 1.0e-218 756.5
Cam11g1837 . 5 551 MLO family AT5G53760 69.2 3.6e-216 748.0
Cam05g1118 . 7 466 MLO family AT5G53760 51.1 2.6e-126 449.5
Cam03g0232 . 8 536 MLO family AT2G39200 63.8 1.2e-192 669.8
Cam05g2289 . 7 499 MLO family AT2G39200 67.7 8.0e-192 667.2
Cam02g2174 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Cam06g0173 . 6 419 MLO family AT4G24250 54.2 5.9e-117 417.9
Cam02g0035 . 10 421 MLO family AT4G24250 50.9 5.2e-113 404.8
Cam09g1923 . 3 553 MLO family AT1G26700 68.0 6.7e-212 733.8
Cam11g1837 . 1 532 MLO family AT1G26700 68.3 1.8e-209 725.7
Cam06g0173 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006348 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 36