Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0071 ATGGCTTCCATTTCTTCTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAATCAGTGTGGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGTGGCTCCGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTCGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGCCGGTGGGCGAAGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGAAATCCAAACACTTGTCGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTATGCCTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTATCCCCGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATTTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTGAGTCTCTTTTAA 897 52.29 MASISSSLLSLFLFFPFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDAGGRSIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPSLSTSVKSSNGQYPRAVDISRAEHSGRPLTSVAVISTVTAALSRRFLSLF 298
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 2283786 2286469 - CaPI482276_10g000710.1 Cam10g0071 136734
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0071 298 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Cam10g0071 298 PANTHER OS03G0233200 PROTEIN 12 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cam10g0071 298 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Cam10g0071 298 SMART tha2 26 248 IPR001938 -
Cam10g0071 298 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
Cam10g0071 298 PIRSF PR5 1 292 IPR001938 -
Cam10g0071 298 CDD TLP-PA 25 247 - -
Cam10g0071 298 Pfam Thaumatin family 30 248 IPR001938 -
Cam10g0071 298 Gene3D Thaumatin 24 248 IPR037176 -
Cam10g0071 298 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cam10g0071 298 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cam10g0071 298 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Cam10g0071 298 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cam10g0071 298 FunFam THAUMATIN-LIKE PROTEIN 1 24 248 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0302 Cam-Chr1:3371306 Cam10g0071 Cam-Chr10:2283786 6.60E-49 dispersed
Cam01g2080 Cam-Chr1:33856751 Cam10g0071 Cam-Chr10:2283786 2.40E-48 dispersed
Cam05g1992 Cam-Chr5:28726514 Cam10g0071 Cam-Chr10:2283786 2.10E-93 dispersed
Cam08g2006 Cam-Chr8:25815069 Cam10g0071 Cam-Chr10:2283786 5.60E-62 dispersed
Cam10g0070 Cam-Chr10:2270889 Cam10g0071 Cam-Chr10:2283786 9.40E-81 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0071 - - - 0.0