Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0071 | ATGGCTTCCATTTCTTCTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAATCAGTGTGGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGTGGCTCCGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTCGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGCCGGTGGGCGAAGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGAAATCCAAACACTTGTCGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTATGCCTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTATCCCCGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATTTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTGAGTCTCTTTTAA | 897 | 52.29 | MASISSSLLSLFLFFPFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDAGGRSIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPSLSTSVKSSNGQYPRAVDISRAEHSGRPLTSVAVISTVTAALSRRFLSLF | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2283786 | 2286469 | - | CaPI482276_10g000710.1 | Cam10g0071 | 136734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0071 | 298 | ProSitePatterns | Thaumatin family signature. | 86 | 102 | IPR017949 | - | |
Cam10g0071 | 298 | PANTHER | OS03G0233200 PROTEIN | 12 | 248 | IPR001938 | GO:0005576(PANTHER)|GO:0006952(PANTHER) | |
Cam10g0071 | 298 | ProSiteProfiles | Thaumatin family profile. | 23 | 248 | IPR001938 | - | |
Cam10g0071 | 298 | SMART | tha2 | 26 | 248 | IPR001938 | - | |
Cam10g0071 | 298 | SUPERFAMILY | Osmotin, thaumatin-like protein | 24 | 249 | IPR037176 | - | |
Cam10g0071 | 298 | PIRSF | PR5 | 1 | 292 | IPR001938 | - | |
Cam10g0071 | 298 | CDD | TLP-PA | 25 | 247 | - | - | |
Cam10g0071 | 298 | Pfam | Thaumatin family | 30 | 248 | IPR001938 | - | |
Cam10g0071 | 298 | Gene3D | Thaumatin | 24 | 248 | IPR037176 | - | |
Cam10g0071 | 298 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
Cam10g0071 | 298 | PRINTS | Pathogenesis-related protein signature | 125 | 141 | IPR001938 | - | |
Cam10g0071 | 298 | PRINTS | Pathogenesis-related protein signature | 238 | 247 | IPR001938 | - | |
Cam10g0071 | 298 | PRINTS | Pathogenesis-related protein signature | 25 | 37 | IPR001938 | - | |
Cam10g0071 | 298 | FunFam | THAUMATIN-LIKE PROTEIN 1 | 24 | 248 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0302 | Cam-Chr1:3371306 | Cam10g0071 | Cam-Chr10:2283786 | 6.60E-49 | dispersed | |
Cam01g2080 | Cam-Chr1:33856751 | Cam10g0071 | Cam-Chr10:2283786 | 2.40E-48 | dispersed | |
Cam05g1992 | Cam-Chr5:28726514 | Cam10g0071 | Cam-Chr10:2283786 | 2.10E-93 | dispersed | |
Cam08g2006 | Cam-Chr8:25815069 | Cam10g0071 | Cam-Chr10:2283786 | 5.60E-62 | dispersed | |
Cam10g0070 | Cam-Chr10:2270889 | Cam10g0071 | Cam-Chr10:2283786 | 9.40E-81 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0071 | - | - | - | 0.0 |