Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0075 ATGGCTTCTTCCACCACTCTCACTGCTCTTGCAGACCACCCGATTCTGCCGCCCGATTTCGTACGCCACCACGACGAGCGTCCCAAAGTCCCTTACAACCATTTCTCCAATGAAATTCCGATCATCTCCCTTGCCGGGATCGACGGTGAACGCAGGGCCGAGATTTGCCGGAGCATCGTTGAGGCCTGCGAGGACTGGGGGATCTTCCAGGTCGTTGACCATGGCGTCGATTCCACGATTGTTTCCGATATGACTCGTCTCGCTCGAGACTTCTTTGCTCTTCCGCCGGAGGAGAAACTCCGTTTCGATATGTCTGGCGGTAAGAAAGGCGGATTCATCGTCTCTAGTCATCTCAAGGGAGAAGCCATTAAAGATTGGCGTGAGATAGTGACTTATTTCTCATGCCCAGTAAAAGATAGAGACTACTCTTTATGGCCGGACAAACCGGAGGGGTGGGCGACGAAGACGGCAGAGTACAGTGAGAAGTTGATGGGGTTAGCCTGTAAGCTTTTAGAGGTTTTATCAGAAGCCATGGGTTTGGAGAAGGAGGCCTTGACGAAGGCTTGTGTGGACATGGACCAGAAGATTGTGGTGAATTTCTATCCTAAATGCCCTGAACCAGACCTCACTTTGGGGCTAAAACGCCACACTGATCCTGGAACCATAACGTTGCTATTACAAGACCAGGTTGGCGGGCTTCAGGCCACCAAAGATGGTGGTCGGACGTGGATCACCGTCCAGCCCGTCGAAGGTGCCTTTGTCGTCAACTTGGGAGACCATGGCCATATTATCAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCAGTAGTGAACTCAAACACAAGCAGGCTATCAATAGCCACATTTCAAAACCCTTCACAAGAAGCCATTGTATATCCATTGAAGATCAGAGATGGGGAGAAGCCGATTCTTGAGAAGCCCATCACTTTTGCTGAGATGTATAAGATGAAGATGAGCAAAGACATTGAGCTTGCAAGGCTTAAGAAGCAAGCCCAAGAGTTTGTTGGATAA 1035 49.95 MASSTTLTALADHPILPPDFVRHHDERPKVPYNHFSNEIPIISLAGIDGERRAEICRSIVEACEDWGIFQVVDHGVDSTIVSDMTRLARDFFALPPEEKLRFDMSGGKKGGFIVSSHLKGEAIKDWREIVTYFSCPVKDRDYSLWPDKPEGWATKTAEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNFYPKCPEPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDGGRTWITVQPVEGAFVVNLGDHGHIISNGRFKNADHQAVVNSNTSRLSIATFQNPSQEAIVYPLKIRDGEKPILEKPITFAEMYKMKMSKDIELARLKKQAQEFVG 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2307340 2314860 - CaPI482276_10g000750.1 Cam10g0075 136738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0075 344 Pfam 2OG-Fe(II) oxygenase superfamily 193 293 IPR044861 -
Cam10g0075 344 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 189 293 IPR005123 -
Cam10g0075 344 Pfam non-haem dioxygenase in morphine synthesis N-terminal 39 147 IPR026992 -
Cam10g0075 344 Gene3D - 7 332 IPR027443 -
Cam10g0075 344 SUPERFAMILY Clavaminate synthase-like 11 328 - -
Cam10g0075 344 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 34 310 IPR050295 -
Cam10g0075 344 FunFam Naringenin,2-oxoglutarate 3-dioxygenase 7 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0075 K00475 - - cit:102617426 577.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0292 Cam-Chr6:4955414 Cam10g0075 Cam-Chr10:2307340 4.70E-117 dispersed
Cam08g1059 Cam-Chr8:16943396 Cam10g0075 Cam-Chr10:2307340 1.30E-25 dispersed
Cam09g0238 Cam-Chr9:3067142 Cam10g0075 Cam-Chr10:2307340 4.50E-34 dispersed
Cam10g0075 Cam-Chr10:2307340 Cam10g1927 Cam-Chr10:33318520 2.00E-49 dispersed
Cam10g0075 Cam-Chr10:2307340 Cam07g1754 Cam-Chr7:32232568 4.80E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g273 . . Bda06g01122 . . . . Bma14g00091 . . . . . . . Cpe14g01023 . . . . . . . . Cla10g00077 Cam10g0075 Cec10g0077 Cco10g0081 Clacu10g0075 Cmu10g0921 Cre10g0338 Cone8ag0582 . . . . Csa05g00148 . Cme06g02383 Blo03g00791 . . . . . . . . . . . . . Car16g01165 . . . . . . . . . . . . . . . . Lsi09g00122 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64