Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0080 ATGGATGATATTATTATTTCTCCTTCTTCTTCTTCACCAAATTCAACTACTCCTACTCTTCAACAAAGGCTTCAATTCATCCTCCATAATCGCCCTGAATGGTGGGCTTATTCCATTTTTTGGTGGGCTTCTAAAGATATCACTGGGAATCTTATTTTCACTTGGAGAGATGGCCATTTACGTGGCACTCGAGACGGCGGCGGTAGTGGCGGTGGTGGACAACTCATTAGTTTCGGATTCGATGAAGTTTCCGTGGATCGAGTGGGAGGTGCCGATTTCACCAACTTGGAATGGTACTATACGGTATCTATCACTCGGTCGTATGGTGCGGTGGATAATGTGGTCGGTCGGGTGTTCGACTCGAGTGCGTACATCTGGTTGACGGCGGACGATGATGGTCTACATTTGTACGAATGCGAACGAGTAAAAGAAGCACGTTCGCGTGGGATTCAAACCTTGGTTTTTGTTTCTACATCTGTTGGGGTTCTGGAATTGGGTTCTTCTGAGCTGATTAAACAAGATTGGAATTTAGTTCAGTATGCAAAATCACTTTTTGGATCTGCTTCTTCTTCAAGTTTTACACTTTTTAAACAAAAAGATCATGTGGGTACTGGTGGTGGAGGAATAATAATTCAACCGCAAGCTCCGTCGTGCTCCGATGTGGTCAAGAGAGAGATGAGCCGTGATGGTGGCCATGGCGGAGGAGGGTCGTCCTCCGATTCCCTCTCTGATAACTCAGATGGAAATTTCATGTCAATCGTAAATAACAATAACGTCGATAACAAGAGGGGAAAGAGATCAGCAAAGAATAAAACAGAATCCTCGCTGCCTGTCAACCACGTGGAAGCAGAACGGCAGCGACGACAGAAGCTGAACCAACGATTCTACGCGCTCCGATCAGTGGTTCCGAATGTATCGAAAATGGACAAAGCTTCTTTACTCGCCGACGCAGCAGATTACATCAGGGAGCTGAAGTCCAAGGTTCAAAAATTGGAGTCTAAGCTAAAACAACCACAGCACCAAACAAGTAGCAGCATGAGCAATGCACTTGATCAGAACCGAAGCAATATCTTGACGGTCGAGCAGACAATGAGCTCAACGAGTTACGCAATAAACAAAAGCAGCAGCAGCAGCAGCAGCAACAACAACAACGTAGAAGTGCGACTTATGGGATCGGAAGCAGTTGTTAGAGTTCAATGCAGAGATGAAAATTACCCATCAGCAAGGCTTTTGAATGTGCTAAGAGATTTGGGACTTCAAGTTCATCATGCAAGTTTGTCAAGTGTAAATGATCTGATGCTGCAAGATGTTATTGTTAGAGTTCCTCATGGAACAGCCTTGAGAGAAAAGACCTTAAAAACAGCCATACTTCAAAGACTTGAATAA 1386 44.52 MDDIIISPSSSSPNSTTPTLQQRLQFILHNRPEWWAYSIFWWASKDITGNLIFTWRDGHLRGTRDGGGSGGGGQLISFGFDEVSVDRVGGADFTNLEWYYTVSITRSYGAVDNVVGRVFDSSAYIWLTADDDGLHLYECERVKEARSRGIQTLVFVSTSVGVLELGSSELIKQDWNLVQYAKSLFGSASSSSFTLFKQKDHVGTGGGGIIIQPQAPSCSDVVKREMSRDGGHGGGGSSSDSLSDNSDGNFMSIVNNNNVDNKRGKRSAKNKTESSLPVNHVEAERQRRQKLNQRFYALRSVVPNVSKMDKASLLADAADYIRELKSKVQKLESKLKQPQHQTSSSMSNALDQNRSNILTVEQTMSSTSYAINKSSSSSSSNNNNVEVRLMGSEAVVRVQCRDENYPSARLLNVLRDLGLQVHHASLSSVNDLMLQDVIVRVPHGTALREKTLKTAILQRLE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2356530 2358543 - CaPI482276_10g000800.1 Cam10g0080 136743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0080 461 MobiDBLite consensus disorder prediction 335 354 - -
Cam10g0080 461 Pfam Helix-loop-helix DNA-binding domain 279 325 IPR011598 GO:0046983(InterPro)
Cam10g0080 461 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Cam10g0080 461 Gene3D - 257 342 IPR036638 GO:0046983(InterPro)
Cam10g0080 461 PANTHER MYC 16 459 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cam10g0080 461 Coils Coil 314 341 - -
Cam10g0080 461 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
Cam10g0080 461 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 343 IPR036638 GO:0046983(InterPro)
Cam10g0080 461 MobiDBLite consensus disorder prediction 234 261 - -
Cam10g0080 461 MobiDBLite consensus disorder prediction 207 285 - -
Cam10g0080 461 MobiDBLite consensus disorder prediction 331 354 - -
Cam10g0080 461 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 185 IPR025610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0281 Cam-Chr6:4750000 Cam10g0080 Cam-Chr10:2356530 5.00E-74 dispersed
Cam06g0282 Cam-Chr6:4755155 Cam10g0080 Cam-Chr10:2356530 4.40E-70 dispersed
Cam07g0020 Cam-Chr7:1396051 Cam10g0080 Cam-Chr10:2356530 5.50E-08 dispersed
Cam09g1183 Cam-Chr9:12860593 Cam10g0080 Cam-Chr10:2356530 6.40E-31 dispersed
Cam10g0080 Cam-Chr10:2356530 Cam11g1025 Cam-Chr11:19337304 9.10E-29 dispersed
Cam10g0080 Cam-Chr10:2356530 Cam10g0160 Cam-Chr10:3229778 7.20E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013416 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52675 PF14215 bHLH-MYC_N 6.00E-35 CL0161 Cam TF