Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0124 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGCCTCCTACTACTACTACACAGGAGCAGACTACAACCACAAGCGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCATATCCTTTTAGCCCCTTTACAATGCCTTCTCCGAATGGAATCACCGAGGCCTCTGGTAATACAGCAGGCAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGCTGGGTAAAGCATCTGGAACATCTGCCAATGGAGCATATTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCTCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATGCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAAGTTCCGGGAAACGAAGAAGTAAGGGCCAGCAGGAACGGCCAGCGTTTAAGTAACGAAACCACGCAACCTACAGAGTCAGAGGTTGTGCAAGTTGGTATCAAGAATTGA 1218 47.45 MSGSEMEKPPKDKETKTPPPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFTMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKASGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRPDTLEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGASGVVPGPTTNLNIGMDYWGASSTIPAMRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVPGNEEVRASRNGQRLSNETTQPTESEVVQVGIKN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2812691 2817526 + CaPI482276_10g001240.1 Cam10g0124 136787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0124 405 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 386 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cam10g0124 405 Pfam G-box binding protein MFMR 4 98 IPR012900 -
Cam10g0124 405 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0124 405 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0124 405 MobiDBLite consensus disorder prediction 120 205 - -
Cam10g0124 405 MobiDBLite consensus disorder prediction 17 42 - -
Cam10g0124 405 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0124 405 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0124 405 MobiDBLite consensus disorder prediction 361 405 - -
Cam10g0124 405 MobiDBLite consensus disorder prediction 1 44 - -
Cam10g0124 405 MobiDBLite consensus disorder prediction 380 399 - -
Cam10g0124 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0124 405 Gene3D - 302 356 - -
Cam10g0124 405 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0124 405 MobiDBLite consensus disorder prediction 148 205 - -
Cam10g0124 405 MobiDBLite consensus disorder prediction 1 15 - -
Cam10g0124 405 Coils Coil 319 367 - -
Cam10g0124 405 MobiDBLite consensus disorder prediction 301 324 - -
Cam10g0124 405 Pfam Disordered region downstream of MFMR 137 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0130 Cam-Chr5:1553149 Cam10g0124 Cam-Chr10:2812691 1.40E-23 dispersed
Cam10g0124 Cam-Chr10:2812691 Cam09g1142 Cam-Chr9:11933658 1.40E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52676 PF16596 MFMR_assoc 5.90E-48 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0124 K09060 - csv:101206627 714.916