Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0124 | ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGCCTCCTACTACTACTACACAGGAGCAGACTACAACCACAAGCGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCATATCCTTTTAGCCCCTTTACAATGCCTTCTCCGAATGGAATCACCGAGGCCTCTGGTAATACAGCAGGCAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGCTGGGTAAAGCATCTGGAACATCTGCCAATGGAGCATATTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCTCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATGCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAAGTTCCGGGAAACGAAGAAGTAAGGGCCAGCAGGAACGGCCAGCGTTTAAGTAACGAAACCACGCAACCTACAGAGTCAGAGGTTGTGCAAGTTGGTATCAAGAATTGA | 1218 | 47.45 | MSGSEMEKPPKDKETKTPPPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFTMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKASGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRPDTLEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGASGVVPGPTTNLNIGMDYWGASSTIPAMRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVPGNEEVRASRNGQRLSNETTQPTESEVVQVGIKN | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2812691 | 2817526 | + | CaPI482276_10g001240.1 | Cam10g0124 | 136787 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0124 | 405 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 23 | 386 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro) | |
Cam10g0124 | 405 | Pfam | G-box binding protein MFMR | 4 | 98 | IPR012900 | - | |
Cam10g0124 | 405 | CDD | bZIP_plant_GBF1 | 304 | 354 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0124 | 405 | Pfam | bZIP transcription factor | 299 | 361 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 120 | 205 | - | - | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 17 | 42 | - | - | |
Cam10g0124 | 405 | SMART | brlzneu | 299 | 363 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0124 | 405 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 306 | 321 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 361 | 405 | - | - | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 380 | 399 | - | - | |
Cam10g0124 | 405 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 301 | 364 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0124 | 405 | Gene3D | - | 302 | 356 | - | - | |
Cam10g0124 | 405 | SUPERFAMILY | Leucine zipper domain | 302 | 358 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 148 | 205 | - | - | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cam10g0124 | 405 | Coils | Coil | 319 | 367 | - | - | |
Cam10g0124 | 405 | MobiDBLite | consensus disorder prediction | 301 | 324 | - | - | |
Cam10g0124 | 405 | Pfam | Disordered region downstream of MFMR | 137 | 264 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0130 | Cam-Chr5:1553149 | Cam10g0124 | Cam-Chr10:2812691 | 1.40E-23 | dispersed | |
Cam10g0124 | Cam-Chr10:2812691 | Cam09g1142 | Cam-Chr9:11933658 | 1.40E-118 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52676 | PF16596 | MFMR_assoc | 5.90E-48 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0124 | K09060 | - | csv:101206627 | 714.916 |