Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0137 ATGTCGTTGTTCTTCTCGGTTTCCGACAAATCTCAGCCACCCACGTGTCCCCAACTCCAGGATCTCGGCGACATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCGTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCTTCGGGTATATTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAATACCTTAGGAACGCCGAAGGATACGCCTGAGCTACGAGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACATCCGCTAAACTTAAACAAGCCAGCGAAATAGATCATCACGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAGGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAAACTGTTCTACCTTCTAGCTACACAGCCGGCGAGGCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTAGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATCTTTAAAGATCTTGCAGTTCTAGTCCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATAGAGGGTGCCCATGCTGCAACGTCACAGGGAACAACTCAGCTTGCAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGTTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAA 897 44.7 MSLFFSVSDKSQPPTCPQLQDLGDMSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLAKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2991112 2995953 + CaPI482276_10g001370.1 Cam10g0137 136800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0137 298 SUPERFAMILY t-snare proteins 48 260 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam10g0137 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Cam10g0137 298 Pfam Syntaxin-like protein 54 154 IPR006011 GO:0016020(InterPro)
Cam10g0137 298 Gene3D - 198 298 - -
Cam10g0137 298 FunFam Syntaxin-22 like 45 158 - -
Cam10g0137 298 Gene3D - 45 158 - -
Cam10g0137 298 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam10g0137 298 CDD SNARE_Qa 208 266 - -
Cam10g0137 298 SMART SynN_4 40 152 IPR006011 GO:0016020(InterPro)
Cam10g0137 298 CDD SynN 48 171 IPR006011 GO:0016020(InterPro)
Cam10g0137 298 SMART tSNARE_6 200 267 IPR000727 -
Cam10g0137 298 PANTHER SYNTAXIN 61 288 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cam10g0137 298 FunFam Syntaxin-22 like 198 298 - -
Cam10g0137 298 Pfam SNARE domain 242 293 IPR000727 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0137 - - - 0.0