Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0138 ATGGAGGGGACTGCTAATGGCGGCGATGCTGGATTGGCTTCCGGGAGTGTCAACTCTCAGCCGACGGTGCCGGCTCCTATCACTAATTCTAACGCGCCTCCACCGTTCTTGAGTAAGACATATGATATGGTGGATGATCCGGCTACCGATGCGGTTGTGTCCTGGAGCCCTACGAATAATAGCTTTGTGGTTTGGAACCCGCCTGAGTTCGCTAGGGATCTTTTGCCCAAATACTTCAAGCATAATAACTTCTCCAGCTTCGTCAGGCAGCTCAATACCTATGGCTTCAGGAAAGTTGATCCAGACCGTTGGGAATTTGCTAATGAAGGCTTCTTAAGAGGTCAGAAACACCTGCTTAAGAGCATTACTCGGCGGAAACCTGTCCATGGGCACAGTCAGCAACAACCACAGCAGTCTCATGGACAAAGTTCTTCAGTCGGAGCTTGTGTGGAAGTTGGTAAGTTTGGTTTGGAGGAAGAGGTTGAGAGGCTTAAGAGAGACAAAAATGTACTCATGCAGGAACTTGTGAGATTGAGGCAGCAGCAACAGACTACTGACAACCAGTTGCAAACTATGGTACAGCGTCTACAGGGGATGGAGCAGCGACAGCAGCAGATGATGTCATTCCTTGCAAAGGCTGTGCAAAGTCCTGGCTTTTTGGCTCAGTTTGTGCAGCAGCAAAATGAAAGTACTAGACGCATAAGTGAAGCTAATAAAAAGCGAAGGCTAAAGCAGGATGGAATTGCTGAGTCTGAGCATTCTACTGTTCCTGATGGGCAAATTGTGAAATATCAACCTCTCATGAATGAGGCAGCAAAAACAATGCTGAGGCAGATATTGAAAATAGATACTTCACGTTTGGAACCATTGAACCATAATACTGACAGTTTCCTAATTAGTGATGGTTTGCAATCATCGTGTGCAGCAGTGGACAATGGGAACTCCAGTTCTGTATCAGGCGTGACTCTTCAAGAGGTACCTCCAACCTCATCTTTTAATTCAGCTGCTTCTGGTGTTGCTCCTCATGGCCCCTCAACAGCCAAATCAGAAATGCAATCGTCACCCCAAGCTACAAATTCTGACAAGGTTTCAACTGCTCCCTTTTCTGTTAATGCTGTGCGGGGTCCAGGGGCACGAGAAGCTTCTCCCCTGTCGGTTTCTGAGACGGACGTAATCATGCCTGAGCTTTCCCATATATCTGACATGGTGCCTGAGAACATTATTGATGTCCCTGAAGTGGATTATAGGGTACCCGAGGCAGTAAATGGTGCATTTATAAGTCCAAGCTTTTTGGATGCCAATGGAACTATTCCAATAGAGATTGATAATATATCCCCTGATGCTGATATTGATGCCTTGCTAGACAATTCCAACTTCTGGGATGATTTGCTTGTGCAAAGTCCATGTCAAGACGAGGAGGTTGACTTTATGGTTGGAGGAGGATTACCAAAGACGAATGATGTGCAGCCCGTAGAAAATGCATGGGACAAATCTAAACACGTGGATAAACTTACAGAACAGATGGGCCTTCTCACTTCAGAAATTAAAAGGGTTTGA 1557 46.05 MEGTANGGDAGLASGSVNSQPTVPAPITNSNAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPVHGHSQQQPQQSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESTRRISEANKKRRLKQDGIAESEHSTVPDGQIVKYQPLMNEAAKTMLRQILKIDTSRLEPLNHNTDSFLISDGLQSSCAAVDNGNSSSVSGVTLQEVPPTSSFNSAASGVAPHGPSTAKSEMQSSPQATNSDKVSTAPFSVNAVRGPGAREASPLSVSETDVIMPELSHISDMVPENIIDVPEVDYRVPEAVNGAFISPSFLDANGTIPIEIDNISPDADIDALLDNSNFWDDLLVQSPCQDEEVDFMVGGGLPKTNDVQPVENAWDKSKHVDKLTEQMGLLTSEIKRV 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2998688 3003116 - CaPI482276_10g001380.1 Cam10g0138 136801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0138 518 Coils Coil 154 181 - -
Cam10g0138 518 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0138 518 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0138 518 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0138 518 FunFam Heat shock transcription factor 1 29 126 - -
Cam10g0138 518 MobiDBLite consensus disorder prediction 314 363 - -
Cam10g0138 518 ProSitePatterns HSF-type DNA-binding domain signature. 75 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0138 518 Gene3D - 28 126 IPR036388 -
Cam10g0138 518 MobiDBLite consensus disorder prediction 128 146 - -
Cam10g0138 518 MobiDBLite consensus disorder prediction 1 41 - -
Cam10g0138 518 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 356 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cam10g0138 518 SUPERFAMILY Winged helix DNA-binding domain 32 125 IPR036390 -
Cam10g0138 518 MobiDBLite consensus disorder prediction 11 36 - -
Cam10g0138 518 SMART hsfneu3 32 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0138 518 MobiDBLite consensus disorder prediction 124 146 - -
Cam10g0138 518 Pfam HSF-type DNA-binding 36 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0138 K09419 - - csv:101207437 914.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1887 Cam-Chr2:31923394 Cam10g0138 Cam-Chr10:2998688 6.60E-49 dispersed
Cam03g0699 Cam-Chr3:7880418 Cam10g0138 Cam-Chr10:2998688 2.40E-49 dispersed
Cam05g0353 Cam-Chr5:3279533 Cam10g0138 Cam-Chr10:2998688 7.00E-53 dispersed
Cam05g2203 Cam-Chr5:30357920 Cam10g0138 Cam-Chr10:2998688 1.00E-24 dispersed
Cam08g2076 Cam-Chr8:26311951 Cam10g0138 Cam-Chr10:2998688 9.30E-40 dispersed
Cam09g0717 Cam-Chr9:7168203 Cam10g0138 Cam-Chr10:2998688 2.90E-61 dispersed
Cam09g1174 Cam-Chr9:12577719 Cam10g0138 Cam-Chr10:2998688 2.30E-52 dispersed
Cam10g0138 Cam-Chr10:2998688 Cam10g1899 Cam-Chr10:33063235 3.50E-53 dispersed
Cam10g0138 Cam-Chr10:2998688 Cam05g0560 Cam-Chr5:4958190 1.70E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0560 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cam09g0717 . 8 249 HSF AT4G17750 51.0 1.8e-59 227.3
Cam08g2180 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cam01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cam08g2076 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cam05g0560 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cam07g0048 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Cam09g0717 . 9 221 HSF AT5G16820 54.0 5.3e-56 215.7
Cam08g2180 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cam01g2455 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Cam06g0911 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cam02g1887 . 13 188 HSF AT5G16820 50.3 2.8e-41 166.8
Cam10g0138 . 24 514 HSF AT1G32330 53.7 1.4e-120 430.3
Cam05g0560 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cam07g0048 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Cam09g0717 . 8 217 HSF AT1G32330 53.0 6.3e-57 218.8
Cam08g2180 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cam08g2076 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cam07g0048 . 41 262 HSF AT3G02990 52.6 2.8e-62 236.5
Cam05g0560 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cam09g0717 . 9 232 HSF AT3G02990 52.4 1.9e-58 223.8
Cam08g2180 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cam06g0911 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cam05g0560 . 25 287 HSF AT2G26150 52.3 1.1e-68 257.3
Cam10g0138 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cam09g0717 . 3 216 HSF AT2G26150 53.0 1.5e-60 230.3
Cam11g0179 . 28 247 HSF AT2G26150 51.1 8.8e-53 204.5
Cam03g0699 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cam10g1899 . 200 456 HSF AT5G03720 56.7 9.8e-75 277.7
Cam05g0353 . 6 462 HSF AT4G13980 51.7 3.1e-117 419.1
Cam02g1887 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cam05g0560 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cam08g2180 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cam09g0717 . 4 333 HSF AT3G22830 53.3 4.0e-89 325.5
Cam07g0048 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Cam08g2180 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cam10g0138 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Cam07g0048 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Cam09g0717 . 3 308 HSF AT3G51910 50.2 7.7e-68 254.2
Cam08g2180 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cam07g0048 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cam08g2180 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cam02g1887 . 5 140 HSF AT3G63350 56.6 2.9e-38 156.0
Cam11g0179 . 32 248 HSF AT5G54070 51.4 3.2e-52 202.6
Cam01g1727 . 2 297 HSF AT4G36990 51.8 2.7e-71 265.8
Cam05g0952 . 613 720 HSF AT4G36990 64.8 3.9e-38 155.6
Cam08g2076 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cam01g0304 . 64 385 HSF AT4G11660 51.8 2.1e-79 293.1
Cam08g2076 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cam01g1727 . 2 107 HSF AT4G11660 71.7 3.4e-42 169.5
Cam03g1190 . 19 118 HSF AT4G11660 68.0 1.0e-38 157.9
Cam10g0138 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cam10g1552 . 14 222 HSF AT2G41690 53.6 5.3e-52 201.4
Cam04g0366 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cam08g2076 . 9 373 HSF AT1G46264 52.5 5.9e-89 324.7
Cam03g1190 . 18 199 HSF AT1G46264 51.9 2.9e-51 199.5
Cam10g0138 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cam02g1887 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Cam10g1552 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
Cam05g0560 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cam09g0717 . 8 249 HSF AT4G17750 51.0 1.8e-59 227.3
Cam08g2180 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cam01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cam08g2076 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cam05g0560 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cam07g0048 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Cam09g0717 . 9 221 HSF AT5G16820 54.0 5.3e-56 215.7
Cam08g2180 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cam01g2455 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Cam06g0911 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cam02g1887 . 13 188 HSF AT5G16820 50.3 2.8e-41 166.8
Cam10g0138 . 24 514 HSF AT1G32330 53.7 1.4e-120 430.3
Cam05g0560 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cam07g0048 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Cam09g0717 . 8 217 HSF AT1G32330 53.0 6.3e-57 218.8
Cam08g2180 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cam08g2076 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cam07g0048 . 41 262 HSF AT3G02990 52.6 2.8e-62 236.5
Cam05g0560 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cam09g0717 . 9 232 HSF AT3G02990 52.4 1.9e-58 223.8
Cam08g2180 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cam06g0911 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cam05g0560 . 25 287 HSF AT2G26150 52.3 1.1e-68 257.3
Cam10g0138 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cam09g0717 . 3 216 HSF AT2G26150 53.0 1.5e-60 230.3
Cam11g0179 . 28 247 HSF AT2G26150 51.1 8.8e-53 204.5
Cam03g0699 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cam10g1899 . 200 456 HSF AT5G03720 56.7 9.8e-75 277.7
Cam05g0353 . 6 462 HSF AT4G13980 51.7 3.1e-117 419.1
Cam02g1887 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cam05g0560 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cam08g2180 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cam09g0717 . 4 333 HSF AT3G22830 53.3 4.0e-89 325.5
Cam07g0048 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Cam08g2180 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cam10g0138 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Cam07g0048 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Cam09g0717 . 3 308 HSF AT3G51910 50.2 7.7e-68 254.2
Cam08g2180 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cam07g0048 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cam08g2180 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cam02g1887 . 5 140 HSF AT3G63350 56.6 2.9e-38 156.0
Cam11g0179 . 32 248 HSF AT5G54070 51.4 3.2e-52 202.6
Cam01g1727 . 2 297 HSF AT4G36990 51.8 2.7e-71 265.8
Cam05g0952 . 613 720 HSF AT4G36990 64.8 3.9e-38 155.6
Cam08g2076 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cam01g0304 . 64 385 HSF AT4G11660 51.8 2.1e-79 293.1
Cam08g2076 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cam01g1727 . 2 107 HSF AT4G11660 71.7 3.4e-42 169.5
Cam03g1190 . 19 118 HSF AT4G11660 68.0 1.0e-38 157.9
Cam10g0138 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cam10g1552 . 14 222 HSF AT2G41690 53.6 5.3e-52 201.4
Cam04g0366 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cam08g2076 . 9 373 HSF AT1G46264 52.5 5.9e-89 324.7
Cam03g1190 . 18 199 HSF AT1G46264 51.9 2.9e-51 199.5
Cam10g0138 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cam02g1887 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Cam10g1552 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52679 PF00447 HSF_DNA-bind 2.80E-33 CL0123 Cam TF