Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0139 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGACGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCGTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAGCTCCCTATTCGAGCGAATCGAGACGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGATGTTGCACAAATTCTTTTGGACCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCAGATTTGATCGGTCTCTTTGGCAAGCATATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGACGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGGACCCTTCCCGTTAGAGACGAACTTCTTCGGGCACTATTGAACTCTGACCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACCGTGAGCATCAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTCCAAAATGTTTTGAATCTCCCCGAGACTGTATCCAAAGTCGCAGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCTGAGAGATGGGGCAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAAGATGTGCAGGAGGTTGTGGCTGAAACCACCGCAACAGTGGATAGAATTAATACAACATTTAGAAGGCCAGGATATGAGCCTGTGGTTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATTGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGGCAAGGCAATGAGAAGCTTGACGATGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATCGAAGCTGTCACCGAGGCAATGGATTCTGCCTTGGTAATCCCTGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTATGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTCGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAGTCATACTGCAGACTGGGAGACATGTGTAGCTGTGACGGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTACGCAGATCCTGATTTCGGGTCGTGCCAAGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACCCTTTCTCCCGGTGCCGAAGTATTCGGTTGTACCGTTGGCCAGAAACCAAGCAAGGCCAGGTATTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCATGCGACTAGAGCTGCTCTGCAGACGACAGCTCGTAGAGTGGAAAAACGGGAACGCACACCTCCAGCAACGAGCAGCGCGCGCGATCAACCTCCTTGCGGGACGGCGTGCGACAGAGGCTCGACAACGACGCGATTCCGGCGTGCAGTCACGAGCGGCGTCGAATTCTCCGGCGGATCTAGTCAAGCAGCAGCGTGCGATTCTCTCGACGCCACAACCTGCATCCACGACGACGGACAGATTGTCGACGGCGCGAACACCTCCTTGCGTGTTTGGATAAGATTACTTGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATTGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCACTTCGAAACAAAAGCTTGGGACCTGTTAGTACCCTCATTGTTTTAGGCTCAGGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAGAAAGCTCGTACGTATGAGAACCAACTGGCTGATAAGACTGGGGCTGAGGTAGACAAGATTGCACAGTTTATGCAGATCTACAGAAGTAGGGAAGTAGGACAATCATATTTCACTTCTGTTTGGACAACTTTAATTGCCACATTGCATGCACTCTGGCTAATGCTCAAAATTAGACCTCAAGTGATTCTCTGCAATGGCCCTGGTACTTGTATCCCACTATGCGTAATTGCATTCATATTCAAGGTTCTGGGAATTAGATGGTCTTCAATTTTTTATGTGGAAAGCATTGCAAGAGTGAAGAGATTATCATTAAGTGGCTTGATTTTATACAAGTTATACATGGCTGATCAGTTCTTTGTGCAATGGCCACAACTTCAAAGGATGTATCCCCGCGCTCACTACGTCGGTTGTCTCATGTAG 3513 45.37 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRANRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQILLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPSHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAALQTTARRVEKRERTPPATSSARDQPPCGTACDRGSTTTRFRRAVTSGVEFSGGSSQAAACDSLDATTCIHDDGQIVDGANTSLRVWIRLLGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADKTGAEVDKIAQFMQIYRSREVGQSYFTSVWTTLIATLHALWLMLKIRPQVILCNGPGTCIPLCVIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLILYKLYMADQFFVQWPQLQRMYPRAHYVGCLM 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3017249 3026971 + CaPI482276_10g001390.1 Cam10g0139 136802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0139 1170 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0005992(InterPro)
Cam10g0139 1170 NCBIfam trehalose-phosphatase 593 840 IPR003337 GO:0005992(InterPro)
Cam10g0139 1170 SUPERFAMILY HAD-like 594 839 IPR036412 -
Cam10g0139 1170 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cam10g0139 1170 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 842 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Cam10g0139 1170 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
Cam10g0139 1170 Gene3D Glycogen Phosphorylase B; 990 1170 - -
Cam10g0139 1170 MobiDBLite consensus disorder prediction 868 884 - -
Cam10g0139 1170 Gene3D Glycogen Phosphorylase B; 56 314 - -
Cam10g0139 1170 Gene3D - 593 710 IPR023214 -
Cam10g0139 1170 Gene3D - 723 854 IPR023214 -
Cam10g0139 1170 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
Cam10g0139 1170 Pfam Oligosaccharide biosynthesis protein Alg14 like 991 1169 IPR013969 GO:0006488(InterPro)
Cam10g0139 1170 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Cam10g0139 1170 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 990 1170 - -
Cam10g0139 1170 MobiDBLite consensus disorder prediction 853 884 - -
Cam10g0139 1170 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cam10g0139 1170 CDD GT20_TPS 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cam10g0139 1170 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 314 - -
Cam10g0139 1170 Gene3D Glycogen Phosphorylase B; 315 531 - -
Cam10g0139 1170 CDD HAD_TPP 595 831 - -
Cam10g0139 1170 NCBIfam HAD-IIB family hydrolase 596 798 IPR006379 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2449 Cam-Chr1:36319697 Cam10g0139 Cam-Chr10:3017249 0.00E+00 dispersed
Cam03g0713 Cam-Chr3:8015379 Cam10g0139 Cam-Chr10:3017249 5.30E-124 dispersed
Cam05g2715 Cam-Chr5:34495820 Cam10g0139 Cam-Chr10:3017249 0.00E+00 dispersed
Cam06g1835 Cam-Chr6:29369044 Cam10g0139 Cam-Chr10:3017249 0.00E+00 dispersed
Cam10g0139 Cam-Chr10:3017249 Cam11g1750 Cam-Chr11:30042654 4.10E-126 dispersed
Cam10g0139 Cam-Chr10:3017249 Cam07g0257 Cam-Chr7:3666560 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0139 K16055 - csv:101207192 1697.56