Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0160 ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCCGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTCCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGATGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTAGGGTGGGGAGATGGTTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCGACGCCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAATGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCCGCCGCAACAACCACCACCGCTACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTTCTCTAGCCATTCACAGCATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGAGACGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTAGAATTGCTGAAAAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGTGGCGGCGGCGGCAGCAGCCATGGAATGATGTAA 1971 50.03 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLFSSHSQHVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGSSHGMM 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3229778 3231748 + CaPI482276_10g001600.1 Cam10g0160 136823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0160 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983(InterPro)
Cam10g0160 656 MobiDBLite consensus disorder prediction 296 319 - -
Cam10g0160 656 Gene3D - 468 545 IPR036638 GO:0046983(InterPro)
Cam10g0160 656 FunFam Transcription factor bHLH13 462 536 - -
Cam10g0160 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 539 IPR036638 GO:0046983(InterPro)
Cam10g0160 656 Coils Coil 515 542 - -
Cam10g0160 656 MobiDBLite consensus disorder prediction 422 479 - -
Cam10g0160 656 PANTHER MYC 56 644 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cam10g0160 656 MobiDBLite consensus disorder prediction 428 479 - -
Cam10g0160 656 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983(InterPro)
Cam10g0160 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Cam10g0160 656 MobiDBLite consensus disorder prediction 350 410 - -
Cam10g0160 656 SMART finulus 475 524 IPR011598 GO:0046983(InterPro)
Cam10g0160 656 MobiDBLite consensus disorder prediction 50 65 - -
Cam10g0160 656 MobiDBLite consensus disorder prediction 36 67 - -
Cam10g0160 656 MobiDBLite consensus disorder prediction 350 369 - -
Cam10g0160 656 CDD bHLH_AtAIB_like 466 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0160 Cam-Chr10:3229778 Cam11g1195 Cam-Chr11:23588468 3.50E-10 dispersed
Cam02g0775 Cam-Chr2:9551971 Cam10g0160 Cam-Chr10:3229778 1.40E-15 transposed
Cam05g0094 Cam-Chr5:1290782 Cam10g0160 Cam-Chr10:3229778 1.70E-62 transposed
Cam07g0020 Cam-Chr7:1396051 Cam10g0160 Cam-Chr10:3229778 4.00E-19 transposed
Cam07g0077 Cam-Chr7:1947236 Cam10g0160 Cam-Chr10:3229778 1.30E-41 transposed
Cam10g0080 Cam-Chr10:2356530 Cam10g0160 Cam-Chr10:3229778 7.20E-42 transposed
Cam11g1025 Cam-Chr11:19337304 Cam10g0160 Cam-Chr10:3229778 3.20E-07 transposed
Cam10g0160 Cam-Chr10:3229778 Cam09g1183 Cam-Chr9:12860593 7.90E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52681 PF14215 bHLH-MYC_N 9.00E-52 CL0161 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0160 K13422 - csv:101205372 1101.66