Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0168 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCAGCCACAATCCACTCCCCCCAACAGGATGATCCCCAACGCTTCTTATTCCACTAATTTGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAGATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCCTCTAAGCCCTCCGAATCTCCCAATGCGGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCCCCTGATGGGAACATCGCCTTGGGTTTATCCCCAACCCCCATCACTTCTTCCGCCCTTCCTGGCGATTCCGCCGGCATGAACTCCCCGGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAGATGGATGCTTTGGGGACTGGTGGTGTTGGCTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGATATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACACTTCAACCTGCAATGTCAGCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCTGACAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGCGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTTGTGGATGGGAAAAAGCTAGGAGCGAGTAGACAGAAATCTGGGCCATCTTCTACATCTCCCAATATGTTGAACTTTAATACACCCGTGGCAACAGGCTGCCCATCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATCTACACCAATGCCAACCAACCAATGCATAATATGCAGATGTATCAACTATGGGGTAGCCGAAATCAATAA 1083 49.03 MDSRERSMPSVHQHQPQSTPPNRMIPNASYSTNLPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSALPGDSAGMNSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMSAGSVSYEGRYEIISLSGSFLISDNNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASRQKSGPSSTSPNMLNFNTPVATGCPSEGASNNSSDDNGGSPLSRGPGIYTNANQPMHNMQMYQLWGSRNQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3286195 3293181 + CaPI482276_10g001680.1 Cam10g0168 136831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0168 360 ProSiteProfiles PPC domain profile profile. 163 302 IPR005175 -
Cam10g0168 360 MobiDBLite consensus disorder prediction 10 92 - -
Cam10g0168 360 MobiDBLite consensus disorder prediction 118 132 - -
Cam10g0168 360 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Cam10g0168 360 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Cam10g0168 360 MobiDBLite consensus disorder prediction 291 343 - -
Cam10g0168 360 MobiDBLite consensus disorder prediction 288 343 - -
Cam10g0168 360 MobiDBLite consensus disorder prediction 1 161 - -
Cam10g0168 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 280 IPR005175 -
Cam10g0168 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 348 IPR039605 GO:0003680(InterPro)
Cam10g0168 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 281 - -
Cam10g0168 360 CDD DUF296 168 280 IPR005175 -
Cam10g0168 360 Gene3D - 169 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1372 Cam-Chr8:20042464 Cam10g0168 Cam-Chr10:3286195 2.70E-61 dispersed
Cam10g0168 Cam-Chr10:3286195 Cam11g1917 Cam-Chr11:31605971 4.40E-47 dispersed
Cam10g0168 Cam-Chr10:3286195 Cam10g0169 Cam-Chr10:3301644 1.80E-11 tandem
Cam02g2258 Cam-Chr2:35199122 Cam10g0168 Cam-Chr10:3286195 2.00E-18 transposed
Cam10g0168 Cam-Chr10:3286195 Cam05g0298 Cam-Chr5:2841698 5.50E-13 wgd
Cam10g0168 Cam-Chr10:3286195 Cam09g1194 Cam-Chr9:13049685 2.60E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0168 - - - 0.0