Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0171 ATGTGGAACCCTAACCAAGCTCATGGAGACGAGGATGATGATTCATGGGAGATTAGGGCTTTTGCAGAAGACACCGGAAACATTATGGGCACAACTTGGCCCCCTAGGTTCTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCCTAGGTGGCCACATGAATGTCCACCGTCGCGACCGCGTACGTTTCCACCACCAAACTCAATCCAACTCAATTCAACCCATCTCAGCGTCTTTCACCATTCCTGCCCCTAAACTCGTCTACAACGAAAGTGACGGGGTTTGTTTCTTATACCAATTACCAAATGAAAACATCGATTTCCTCAACTCCATCACTTCATCAAGTGCATGTCTCCAGTCGTCCTCGGCCGCTACACAATATCCTTCAAACAGCCCAACCGTGTCATCCTTGCAGACCCTAAAGTCGTCGGGAGAGCTCCGAGGAGGAACGTCGAGCTCCTCATCCCACTGTAGTCACATGTCTAGCAAAGGAGATGAGTCATTAATATCAGTTGATGATCATGGAGATGAGAAGCTTGATCTTGAGCTGAGACTTGGTCATAGGGCATCTCCAGCTTGA 591 48.22 MWNPNQAHGDEDDDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRFHHQTQSNSIQPISASFTIPAPKLVYNESDGVCFLYQLPNENIDFLNSITSSSACLQSSSAATQYPSNSPTVSSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISVDDHGDEKLDLELRLGHRASPA 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3347797 3348387 + CaPI482276_10g001710.1 Cam10g0171 136834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0171 196 SMART c2h2final6 38 60 IPR013087 -
Cam10g0171 196 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Cam10g0171 196 Pfam C2H2-type zinc finger 38 62 IPR013087 -
Cam10g0171 196 Gene3D Classic Zinc Finger 29 84 - -
Cam10g0171 196 MobiDBLite consensus disorder prediction 129 169 - -
Cam10g0171 196 PANTHER OS07G0101800 PROTEIN 10 193 IPR052426 -
Cam10g0171 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Cam10g0171 196 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Cam10g0171 196 MobiDBLite consensus disorder prediction 129 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0171 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0171 Cam-Chr10:3347797 Cam10g2100 Cam-Chr10:34664614 1.50E-17 dispersed
Cam10g0171 Cam-Chr10:3347797 Cam09g1199 Cam-Chr9:13148612 4.00E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007423 2 1 1 5 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52682 PF13912 zf-C2H2_6 1.60E-07 CL0361 Cam TF