Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0176 ATGCAGAAGAGCTTATTCCGGGTCGGTTTCGGCTGCCTCCGATTTGTTCCAGCGCCCCGCTCGTCGTTCTTGGCGGAATCAGAGGTTTTTCAGAGCAGAAAGCTCCATTTCTTCATTCCGTTGACTCCCTGGACCCGTTTGATAACGATTTTGTTTCCAGAAATTTTAGCGAAAAATTCTAAGATTTTGTTTCCAGAATATACCAGCATTATGGAAGAAAGTAAAAACCATCTTTCTGAACAAAGTACAAAGGGGTTTGCTAAAAACACCAAGGATAAAAAACTAAATGTGTATGTGTGGGATATGGATGAGACCATCATCCTGCTCAAGTCCTTGTTGAATGGGACATATGCTGAGGCTTTTTGTGGTTCAAAGGATGTTAAAAAGGGTGAAGAACTTGGCAAAATATGGGAGAAGCAGATTCTTGATCTGTGTGATCATCACTTCTACTATGAACAAATAGAAAACTATAATCAGCCATTTCTTGATGTGTTGAGTGAATATGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGGAAACAAAAGAAAATTGGCTTTTAGGCAACGTGTTATAGCCAATAAGTACAGAGAGGGCCTGCAGAATATCTTTGATCAACAGAAGATGAAGCTCTGGGAAGAGTTATATGAAATGACTGATGTCTATACTGATAGATGGTTTTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCATTTTCAGATAAACGACCACTTGCGTCTGCTGATCAGACACATAACAGTACTTCTAGAAGTTCTCAGCATGTTAATGTCTTAGTGACTTCTGGTGCATTGATACCCAGCCTTGTGAAATGCTTACTATTTCGACTTGATCATCTAATAACACCTGGAAATGTCTACAGTTCATGGGAAGTAGGCAAACTACAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGTCAAATGTTCGTTTCTGCGCAATAGGCGATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCCTCACAGGGGAGAAAATGATATTACAGTGGCATTGACACTGTGTCAACTTTTTGGAGGGAGGGATTTTCCTTTTCAAAGTGGTTCTAATGTCAAAGTACTGACTCCCATAAACCTACATTTACTGCAAGCTGCAGAGTTCTTCCATATCCAGAGATGGTAG 1236 40.78 MQKSLFRVGFGCLRFVPAPRSSFLAESEVFQSRKLHFFIPLTPWTRLITILFPEILAKNSKILFPEYTSIMEESKNHLSEQSTKGFAKNTKDKKLNVYVWDMDETIILLKSLLNGTYAEAFCGSKDVKKGEELGKIWEKQILDLCDHHFYYEQIENYNQPFLDVLSEYDDGRDLSNYDFDQDGFGPPCDDGNKRKLAFRQRVIANKYREGLQNIFDQQKMKLWEELYEMTDVYTDRWFSSARAFLEECSFSDKRPLASADQTHNSTSRSSQHVNVLVTSGALIPSLVKCLLFRLDHLITPGNVYSSWEVGKLQCFQWIKERFDKSNVRFCAIGDGWEECEAAQSLKWPFVKIDLQPGSPHRGENDITVALTLCQLFGGRDFPFQSGSNVKVLTPINLHLLQAAEFFHIQRW 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3371577 3377707 - CaPI482276_10g001760.1 Cam10g0176 136839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0176 411 PANTHER EYES ABSENT 78 355 IPR028472 GO:0004725(InterPro)|GO:0004725(PANTHER)|GO:0005634(PANTHER)|GO:0030154(PANTHER)|GO:0045739(PANTHER)|GO:0048856(PANTHER)
Cam10g0176 411 Gene3D - 96 358 IPR038102 -
Cam10g0176 411 NCBIfam EYA conserved domain 95 361 IPR006545 GO:0007275(InterPro)
Cam10g0176 411 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 95 354 - -
Cam10g0176 411 SFLD Haloacid Dehalogenase 95 354 - -
Cam10g0176 411 FunFam Eyes absent homolog 96 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0176 K15616 - - csv:101203755 523.857
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam09g1020 . 87 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.4 7.5e-113 404.1
Cam06g1976 . 16 903 Protein tyrosine phosphatase (PTP) family AT5G23720 65.6 0.0e+00 1094.0
Cam06g0590 . 75 212 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Cam09g2119 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cam05g2347 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 2.1e-116 415.6
Cam07g0497 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.3 4.8e-97 351.3
Cam10g1259 . 142 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Cam02g1872 . 98 299 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cam09g1098 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cam03g1077 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Cam10g0240 . 86 418 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 5.0e-101 364.8
Cam11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 6.3e-80 294.7
Cam11g0207 . 27 209 Protein tyrosine phosphatase (PTP) family AT5G56610 51.6 2.2e-45 179.1
Cam02g1872 . 132 300 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cam09g1098 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cam03g1077 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cam03g1077 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Cam02g1872 . 123 295 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cam07g0301 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cam10g1514 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.4 8.4e-159 557.0
Cam02g0659 . 89 692 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Cam01g1749 . 115 690 Protein tyrosine phosphatase (PTP) family AT3G19420 60.2 1.0e-197 686.8
Cam01g1749 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 1.4e-189 659.8
Cam02g0659 . 123 692 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Cam06g1369 . 1 1244 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1082.8
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cam08g1249 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cam02g2272 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.0e-69 258.8
Cam10g0176 . 92 380 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 7.8e-101 364.0
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 1.5e-157 553.5
Cam04g0737 . 10 420 Protein tyrosine phosphatase (PTP) family AT5G01290 60.5 1.6e-140 496.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011188 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31