Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0191 ATGTTGAAGCCTTTTGTATATTCCGTGGTCCGTGACATTATATGGGAGTTGGGGGGGCTGCGTTCATTGAGACACAACCTCCAGAACCCGCTGTTGAAATCCTTTGCTTTCTTTCTCTCTTTCTCTTTAGTTGGGATTTGTGAAGAAGGGCTCTGTTTCAAAAGATCAGAGCCATTGCTTCTCTCTCTAAAGAGGTTGGAGAGATTTGATTTGGTGCTGAAAAGCGATTTTCCAAAGGGGCTTAGAGTTCTCCTCCTTGATGGAGACAGCAGTTCTGCTGCTGAGATAAAAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTGCAATGAGAATGATGCATTGTCAGCCATTTTGAGCAAACCCGAGACCTTTCATGTTGCCATTGTGGAGGTAACAACAAGTAATCACAACGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCAAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCACTTGGTGCGATCGAGTTCCTTCAGAAACCGCTCTCTGAGGACAAATTGAGGAATATTTGGCAACATGTTGTTCATAAGGCATTCAATGCAGGCGGTAGTCCCGTCCCCAATTCTTTAAAGCCTATTAAAGAATCCGTTGCCTCCATGCTGCATCTAGAATTAGAAAACAGCGAAAACGAGAATCAAATCCAAAAAGAGTTAGAAATATCGAGCCGCAACGATGACAATGATCATGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCATGGAATGCGACTAGTGGATGATGGTGACTGCCATGATCAATTGAACAGTTCGCTCGAGAAAGAGTGCGGGGAGCAAGATGGGGAGTCAAAATCTGTCGAAACTACTTGTATCAATTCACTTGGTGAAGGTACTTCTCAAGTGGAGAACTCTCAGTTACCTGACCAAGAAGGAATAAAAGAAGAAGAGAACTCTGCTGATGGTTGTGGGGCTGCGAGTAACATCGATCACGACACACATGATCGAGACAATATTAGCAGTTCCGAAAAAAACAAGAGCAAACCATGCGGTGTCAATAATCCTTGTGGGACAAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACGCCCGAACTGCACCGAAAATTTGTACAGGCAGTAGAACAACTTGGAGTGAATCAAGCAATTCCTTCTCGAATTCTTGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAGTATCGAATGCATAAGAGGCACATCTTGCCAAAAGAAGAAGATGGGAGTTGGTCTCATTCAAAGGATCCAATGAAGAAGAACTACTATCCACAAAGACCCGTGATGGCGTTCCCCCCTCCTTATCATTCAAATCATATAATGCCAGTTGCTCCAATCTACCCGCCGTGGGGTCATATGGCTTGCCCCTCGCCCGGTGTCCAAATGTGGGTGCCACCCGGTTATCCGCCATGGCGACCACCGGAAATTTGGCCATGGAAGTCCTATCCTGGGGTGCATGCTGATACATGGGGTTGCCCTGTGACACCACCTCCTCATAGCCCTCTCTCTTCTCATCCTCAACATATTTCAAGATTTGAAAGCACTGATCCATACGATAAAAGCTACGGCATTGCATTCAGTCCTATCGATCTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGAAAGAGGCAATCAGCAAGCCATGGTTGCCATTGCCTTTGGGGTTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCATGGAGGATAGCATGGACGGTGGAGGAAGAGCCACGTAG 1866 45.07 MLKPFVYSVVRDIIWELGGLRSLRHNLQNPLLKSFAFFLSFSLVGICEEGLCFKRSEPLLLSLKRLERFDLVLKSDFPKGLRVLLLDGDSSSAAEIKTKLEEMEYVVVTYCNENDALSAILSKPETFHVAIVEVTTSNHNGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSPVPNSLKPIKESVASMLHLELENSENENQIQKELEISSRNDDNDHELLEGSDKYPAPSTPQQKHGMRLVDDGDCHDQLNSSLEKECGEQDGESKSVETTCINSLGEGTSQVENSQLPDQEGIKEEENSADGCGAASNIDHDTHDRDNISSSEKNKSKPCGVNNPCGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDGSWSHSKDPMKKNYYPQRPVMAFPPPYHSNHIMPVAPIYPPWGHMACPSPGVQMWVPPGYPPWRPPEIWPWKSYPGVHADTWGCPVTPPPHSPLSSHPQHISRFESTDPYDKSYGIAFSPIDLQLADEEIDKVVKEAISKPWLPLPLGLKPPSTESVLSELSRQGISTMEDSMDGGGRAT 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3560519 3566670 + CaPI482276_10g001910.1 Cam10g0191 136854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0191 621 ProSiteProfiles Response regulatory domain profile. 82 195 IPR001789 GO:0000160(InterPro)
Cam10g0191 621 PANTHER TRANSCRIPTION ACTIVATOR GLK1 72 610 IPR044825 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)|GO:0045893(InterPro)
Cam10g0191 621 Gene3D - 81 201 - -
Cam10g0191 621 Pfam Myb-like DNA-binding domain 379 429 IPR001005 -
Cam10g0191 621 MobiDBLite consensus disorder prediction 240 280 - -
Cam10g0191 621 NCBIfam myb-like DNA-binding domain, SHAQKYF class 377 432 IPR006447 GO:0003677(InterPro)
Cam10g0191 621 FunFam Two-component response regulator-like APRR2 80 205 - -
Cam10g0191 621 MobiDBLite consensus disorder prediction 240 255 - -
Cam10g0191 621 SUPERFAMILY Homeodomain-like 375 434 IPR009057 -
Cam10g0191 621 MobiDBLite consensus disorder prediction 341 356 - -
Cam10g0191 621 SUPERFAMILY CheY-like 79 197 IPR011006 -
Cam10g0191 621 MobiDBLite consensus disorder prediction 308 370 - -
Cam10g0191 621 FunFam Two-component response regulator 373 436 - -
Cam10g0191 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 374 433 IPR017930 -
Cam10g0191 621 Gene3D - 373 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0191 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0191 Cam-Chr10:3560519 Cam11g0360 Cam-Chr11:5114880 9.70E-18 dispersed
Cam02g0995 Cam-Chr2:14921636 Cam10g0191 Cam-Chr10:3560519 1.10E-34 transposed
Cam10g0191 Cam-Chr10:3560519 Cam09g1231 Cam-Chr9:13993159 7.70E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52684 PF00249 Myb_DNA-binding 7.10E-09 CL0123 Cam TF