Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0203 ATGGCTGTTCAAGCTCAATACCCTTCCAATGTCCTCCTCCTTAACAGAAATATTCAAGATGCTGAGCATGATTATTCATTGCAACCTCAACCTGGTGGAGGAGGAGGAGGAGGAGGAGTTCTTCAACAGTCTCATGCTCTGTTCAACAATGGAGGTGGGAATCATTTGAGTAATTTAAGGAAAAGAGGAAGAGATAATTCTGTTTCTGTCTCACCTCCCATAATCAATCCTCTCTGTTTTCAACCTCAGATTATTGACCTTTCTCAGCTTCAAAACCACCACCATCCCTCCAATGTCGTATCCACCGGACTCCGGTTGTCTTCCGGTGACCAACCACTTAACCTTTACCATCACCCGCCGCTGCCTCCGCCATCGCAGAATGATTCAAGTCTTGTTTCTCTCTCTTCCTCTGTTTTTATCTCCGATGATTTTTCCTCACAAATCAAACAGCACCGTGATGAAATTGACCAATTCCTTCAAACCCAGGAGGAAGAGATGCGGCGGGCGTTGGCGGAGAAACGGCAGAGGCACTACCGGGAACTACTGGCAGCGGCGGAGGAGAGGGCGGCGAGGAGGTTGAGAGAGAAGGAAGTGGAGGTGGAGAAGGCCACGCGTCGCCACGCGGAGTTAGAAGCACGCGCCGCCAGGTTGAGCATGGAGGCGCAGGCGTGGCAAGAGAAGGCCAGGGCAGAGGAGGCGGCGGCAGCGGCGCTGCAGGCTCAGCTACAGCAAGCGATAATGAGGGGCACCGGAATTGGCGGCGGCGGAGACGGCGGTGTAGTAGGAGACTGCACCGCGGAAGATGCAGAGTCGGGTTACATTGACCCGGGCCGAGTCTTGGCCGAGTCAGGACCGAGTTGCAAAGCGTGTCGGAAGCGAGTCGCGTCGGTGGTTTTGTTGCCGTGTCGGCATTTCTGCGTTTGTACGGTTTGTGATCACGTGGTTCGCACATGCCCGCTTTGTCGGGCCTCGAGGAATTCCAGTGTTGAAGTTTATCTCTCGTGA 1005 53.83 MAVQAQYPSNVLLLNRNIQDAEHDYSLQPQPGGGGGGGGVLQQSHALFNNGGGNHLSNLRKRGRDNSVSVSPPIINPLCFQPQIIDLSQLQNHHHPSNVVSTGLRLSSGDQPLNLYHHPPLPPPSQNDSSLVSLSSSVFISDDFSSQIKQHRDEIDQFLQTQEEEMRRALAEKRQRHYRELLAAAEERAARRLREKEVEVEKATRRHAELEARAARLSMEAQAWQEKARAEEAAAAALQAQLQQAIMRGTGIGGGGDGGVVGDCTAEDAESGYIDPGRVLAESGPSCKACRKRVASVVLLPCRHFCVCTVCDHVVRTCPLCRASRNSSVEVYLS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3708560 3709850 + CaPI482276_10g002030.1 Cam10g0203 136866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0203 334 MobiDBLite consensus disorder prediction 96 130 - -
Cam10g0203 334 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 268 333 - -
Cam10g0203 334 MobiDBLite consensus disorder prediction 24 68 - -
Cam10g0203 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 334 IPR013083 -
Cam10g0203 334 Pfam Zinc finger, C3HC4 type (RING finger) 286 324 - -
Cam10g0203 334 CDD mRING-HC-C3HC5_CGRF1-like 287 322 - -
Cam10g0203 334 Coils Coil 148 248 - -
Cam10g0203 334 ProSiteProfiles Zinc finger RING-type profile. 287 322 IPR001841 -
Cam10g0203 334 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 88 334 - GO:0004842(PANTHER)
Cam10g0203 334 SUPERFAMILY Outer membrane efflux proteins (OEP) 110 254 - -
Cam10g0203 334 PIRSF SBP1_RNase_bind 1 334 - -
Cam10g0203 334 FunFam Baculoviral IAP repeat containing 7 296 332 - -
Cam10g0203 334 SUPERFAMILY RING/U-box 281 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0203 K19042 - - csv:101209391 507.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2263 Cam-Chr8:27717007 Cam10g0203 Cam-Chr10:3708560 4.60E-30 dispersed
Cam09g2289 Cam-Chr9:37351612 Cam10g0203 Cam-Chr10:3708560 7.30E-23 dispersed
Cam10g0203 Cam-Chr10:3708560 Cam09g1250 Cam-Chr9:14462791 6.10E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g582 . Blo03g00131 Bda06g01301 Bda08g00614 Bpe05g00542 Bpe07g00204 Bma07g00980 . Cmo06g00856 Cmo16g01141 Cma02g01583 . Car02g01346 . Sed01g4069 Cpe14g00902 Cpe05g00208 Bhi11g00101 Tan01g2125 Cmetu06g1180 Lac11g2359 Hepe06g1729 Mch10g1614 . Cla10g00197 Cam10g0203 Cec10g0208 Cco10g0208 Clacu10g0205 Cmu10g1048 Cre10g0456 Cone8ag0444 Cone12ag0605 Cone6ag0623 . Lsi07g01237 . Chy04g00042 Cme06g02508 Blo03g00823 Blo19g00261 Bda07g00844 . Bpe08g00864 Bpe11g00356 Bma05g00399 Bma12g00679 . Cmo02g01625 . Cma06g00833 Cma16g01091 . Car16g01033 . . . . . . . . . Cla09g01186 Cam09g1250 Cec09g1266 Cco09g1300 . . Cre09g1214 . Csa03g04659 Chy06g02109 Cme04g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000944 6 2 3 4 5 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 5 1 84