Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0224 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGCCCTCCTGATAAGCCAGTATTATGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGAGCGGATCCTGATGAGTATGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATTCCTGATCATGCTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCCAGTTCTGGGTCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCAGATGCAAGTGATCTGACAGGGCCCTCGCAGTCAACAGCATGGGAGGCAATAGTGCCTTCTAGAAAGAGGACCTGTGTTGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCAATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTGTAAATGAAGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTATTGGACAGGGGTTCTTGCAAGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGTAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAGAATCAGCAAGAACTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAACTTCCGGACAGCTTGAATAGCATGTTTGAGAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTGTCCGGGTGCAAAAAGAGAAGACTGCAAGACTTTGAGTAGGCTGGTCTTGTTGGATTTGTCAAAATCAAAATGGGTGGAGCGATATCATCTACTCAAGAAATTTAGTAGTGGAGAGTCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTTATGAATGACAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACAAGGACTGCAATGAAAAGTCCCAAAAGGGTGATGACAAAGACAAGCGTGGAAAGCAAGGAACTTGTGGACAGCGATGGTTCGTGCTTCAGTCCAAGAAGTTTATTCGCTTTGCCTTCTGATGGTGGTTCCTTCACACTGGAGTCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTTCTTCATCCACCCCTGAGTTTTGGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCACTGA 1620 43.58 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAIVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEVHSESSILPVHYETQNKVVNFSTLGIGRKHSIGQGFLQEQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSCPGAKREDCKTLSRLVLLDLSKSKWVERYHLLKKFSSGESVQGFAAASSSFMNDKRVLDGQNKKLSETRTAMKSPKRVMTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPPLSFGAQQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3963797 3970728 - CaPI482276_10g002240.1 Cam10g0224 136887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0224 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cam10g0224 539 Gene3D - 3 83 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam10g0224 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 369 IPR044589 -
Cam10g0224 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0224 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0224 539 Gene3D - 289 372 IPR038108 -
Cam10g0224 539 MobiDBLite consensus disorder prediction 110 124 - -
Cam10g0224 539 MobiDBLite consensus disorder prediction 520 539 - -
Cam10g0224 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0224 539 MobiDBLite consensus disorder prediction 103 124 - -
Cam10g0224 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0224 539 Pfam Asx homology domain 284 368 IPR028020 -
Cam10g0224 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0224 Cam-Chr10:3963797 Cam09g1283 Cam-Chr9:15448249 7.20E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52686 PF13919 ASXH 2.30E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0224 - - - 0.0