Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0235 | ATGATGTACGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTGGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGGTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTGCCGGAAGTTAAGGTGGCTGTGGCGGAGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTATCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCGTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCACGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGTTGCCGTGGCAAAGTGTACAAGTGGCGAGAAATGA | 861 | 57.38 | MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVAVAEAAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAVTPALASPELIQLVVGTSELQVEVAVAKCTSGEK | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4112772 | 4113632 | - | CaPI482276_10g002350.1 | Cam10g0235 | 136898 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0235 | 286 | ProSiteProfiles | AP2/ERF domain profile. | 146 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0235 | 286 | PRINTS | Ethylene responsive element binding protein signature | 170 | 186 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0235 | 286 | PRINTS | Ethylene responsive element binding protein signature | 147 | 158 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0235 | 286 | MobiDBLite | consensus disorder prediction | 215 | 239 | - | - | |
Cam10g0235 | 286 | PANTHER | DNA-BINDING DOMAIN | 130 | 233 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Cam10g0235 | 286 | SMART | rav1_2 | 146 | 210 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0235 | 286 | MobiDBLite | consensus disorder prediction | 211 | 254 | - | - | |
Cam10g0235 | 286 | CDD | AP2 | 145 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0235 | 286 | Gene3D | AP2/ERF domain | 145 | 207 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0235 | 286 | FunFam | Ethylene-responsive transcription factor 2 | 145 | 205 | - | - | |
Cam10g0235 | 286 | Pfam | AP2 domain | 146 | 197 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0235 | 286 | SUPERFAMILY | DNA-binding domain | 146 | 206 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0014 | Cam-Chr5:619674 | Cam10g0235 | Cam-Chr10:4112772 | 8.00E-25 | dispersed | |
Cam07g1714 | Cam-Chr7:31900860 | Cam10g0235 | Cam-Chr10:4112772 | 5.20E-36 | dispersed | |
Cam09g0752 | Cam-Chr9:7659532 | Cam10g0235 | Cam-Chr10:4112772 | 2.40E-23 | dispersed | |
Cam09g0753 | Cam-Chr9:7671872 | Cam10g0235 | Cam-Chr10:4112772 | 1.90E-19 | dispersed | |
Cam10g0235 | Cam-Chr10:4112772 | Cam10g0471 | Cam-Chr10:7144111 | 4.00E-19 | dispersed | |
Cam10g0235 | Cam-Chr10:4112772 | Cam10g0236 | Cam-Chr10:4139093 | 1.70E-25 | tandem | |
Cam01g0452 | Cam-Chr1:4855850 | Cam10g0235 | Cam-Chr10:4112772 | 4.30E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52687 | PF00847 | AP2 | 1.20E-14 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0235 | K09286 | - | csv:101203663 | 434.106 |