Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0235 ATGATGTACGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTGGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGGTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTGCCGGAAGTTAAGGTGGCTGTGGCGGAGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTATCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCGTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCACGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGTTGCCGTGGCAAAGTGTACAAGTGGCGAGAAATGA 861 57.38 MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVAVAEAAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAVTPALASPELIQLVVGTSELQVEVAVAKCTSGEK 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4112772 4113632 - CaPI482276_10g002350.1 Cam10g0235 136898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0235 286 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0235 286 PRINTS Ethylene responsive element binding protein signature 170 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0235 286 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0235 286 MobiDBLite consensus disorder prediction 215 239 - -
Cam10g0235 286 PANTHER DNA-BINDING DOMAIN 130 233 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cam10g0235 286 SMART rav1_2 146 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0235 286 MobiDBLite consensus disorder prediction 211 254 - -
Cam10g0235 286 CDD AP2 145 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0235 286 Gene3D AP2/ERF domain 145 207 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0235 286 FunFam Ethylene-responsive transcription factor 2 145 205 - -
Cam10g0235 286 Pfam AP2 domain 146 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0235 286 SUPERFAMILY DNA-binding domain 146 206 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0014 Cam-Chr5:619674 Cam10g0235 Cam-Chr10:4112772 8.00E-25 dispersed
Cam07g1714 Cam-Chr7:31900860 Cam10g0235 Cam-Chr10:4112772 5.20E-36 dispersed
Cam09g0752 Cam-Chr9:7659532 Cam10g0235 Cam-Chr10:4112772 2.40E-23 dispersed
Cam09g0753 Cam-Chr9:7671872 Cam10g0235 Cam-Chr10:4112772 1.90E-19 dispersed
Cam10g0235 Cam-Chr10:4112772 Cam10g0471 Cam-Chr10:7144111 4.00E-19 dispersed
Cam10g0235 Cam-Chr10:4112772 Cam10g0236 Cam-Chr10:4139093 1.70E-25 tandem
Cam01g0452 Cam-Chr1:4855850 Cam10g0235 Cam-Chr10:4112772 4.30E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52687 PF00847 AP2 1.20E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0235 K09286 - csv:101203663 434.106