Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0245 | ATGGAAGATCCTCTTCACAGATTCCAATTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCTGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCACCGCCGTCGCCGCCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG | 681 | 46.7 | MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSPPSDCFAYRGSLL | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4262981 | 4263661 | + | CaPI482276_10g002450.1 | Cam10g0245 | 136908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0245 | 226 | CDD | AP2 | 45 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0245 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0245 | 226 | SUPERFAMILY | DNA-binding domain | 44 | 102 | IPR016177 | GO:0003677(InterPro) | |
Cam10g0245 | 226 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cam10g0245 | 226 | SMART | rav1_2 | 44 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0245 | 226 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Cam10g0245 | 226 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0245 | 226 | PRINTS | Ethylene responsive element binding protein signature | 67 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0245 | 226 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Cam10g0245 | 226 | FunFam | Ethylene-responsive transcription factor 2 | 43 | 102 | - | - | |
Cam10g0245 | 226 | Gene3D | AP2/ERF domain | 44 | 102 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0245 | 226 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 27 | 184 | IPR051032 | - | |
Cam10g0245 | 226 | Pfam | AP2 domain | 44 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g0253 | Cam-Chr6:4367494 | Cam10g0245 | Cam-Chr10:4262981 | 5.10E-34 | dispersed | |
Cam08g0096 | Cam-Chr8:1722249 | Cam10g0245 | Cam-Chr10:4262981 | 5.80E-27 | dispersed | |
Cam10g0245 | Cam-Chr10:4262981 | Cam11g0326 | Cam-Chr11:4794562 | 1.30E-36 | dispersed | |
Cam10g0245 | Cam-Chr10:4262981 | Cam11g1537 | Cam-Chr11:28196751 | 7.60E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52691 | PF00847 | AP2 | 5.10E-13 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0245 | - | - | - | 0.0 |