Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0245 ATGGAAGATCCTCTTCACAGATTCCAATTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCTGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCACCGCCGTCGCCGCCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG 681 46.7 MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSPPSDCFAYRGSLL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4262981 4263661 + CaPI482276_10g002450.1 Cam10g0245 136908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0245 226 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0245 226 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0245 226 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677(InterPro)
Cam10g0245 226 MobiDBLite consensus disorder prediction 1 43 - -
Cam10g0245 226 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0245 226 MobiDBLite consensus disorder prediction 25 43 - -
Cam10g0245 226 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0245 226 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0245 226 MobiDBLite consensus disorder prediction 8 24 - -
Cam10g0245 226 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Cam10g0245 226 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0245 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 184 IPR051032 -
Cam10g0245 226 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0253 Cam-Chr6:4367494 Cam10g0245 Cam-Chr10:4262981 5.10E-34 dispersed
Cam08g0096 Cam-Chr8:1722249 Cam10g0245 Cam-Chr10:4262981 5.80E-27 dispersed
Cam10g0245 Cam-Chr10:4262981 Cam11g0326 Cam-Chr11:4794562 1.30E-36 dispersed
Cam10g0245 Cam-Chr10:4262981 Cam11g1537 Cam-Chr11:28196751 7.60E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52691 PF00847 AP2 5.10E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0245 - - - 0.0