Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0286 ATGTCAGCCATTGAAGACGAAGATCCTCGCATCCATGGCATCCGAACCAAAATCCGAGTCGTTCCTGATTTTCCGAAACCAGGCATCATGTTCCAGGACATTACGACTCTGTTGCTTGAACCGAAGGCGTTCAAGGATGCAATTGACATGTTCGTTGAGCGATACAAGGGGAAAAACATCACTGTCGTTGCAGGAATTGAGGCGAGAGGGTTTATTTTTGGTCCTGCAATTGCGTTGGCTATTGGAGCCAAGTTTGTGCCCTTGAGAAAACCAAAGAAATTGCCTGGTGAAGTTATGTATGAAGAGTACGTGTTGGAATATGGAAGAGATTGCCTGGAAATGCATGTTGGGGCTGTTGAGGCCGGCGAACGTGCTTTGGTTGTTGATGACTTGATTGCCACTGGTGGCACCCTCTGTGCAGCCATCAATTTACTTGAACGAGCTGAAGCCGAAGTGGTTGAATGTGCTTGCGTAATTGAATTACCGGATTTAAAGGGTCGGGAGAGGTTAAGTGGGAAACCACTGTACATTTTGGTGGAGTATCGGCGTGGTTAA 555 47.03 MSAIEDEDPRIHGIRTKIRVVPDFPKPGIMFQDITTLLLEPKAFKDAIDMFVERYKGKNITVVAGIEARGFIFGPAIALAIGAKFVPLRKPKKLPGEVMYEEYVLEYGRDCLEMHVGAVEAGERALVVDDLIATGGTLCAAINLLERAEAEVVECACVIELPDLKGRERLSGKPLYILVEYRRG 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4935908 4947294 + CaPI482276_10g002860.1 Cam10g0286 136949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0286 184 CDD PRTases_typeI 47 180 IPR000836 -
Cam10g0286 184 Gene3D - 2 182 IPR029057 -
Cam10g0286 184 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 180 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Cam10g0286 184 Pfam Phosphoribosyl transferase domain 40 163 IPR000836 -
Cam10g0286 184 SUPERFAMILY PRTase-like 13 174 IPR029057 -
Cam10g0286 184 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
Cam10g0286 184 NCBIfam adenine phosphoribosyltransferase 15 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Cam10g0286 184 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0286 K00759 - - csv:101218731 322.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2118 Cam-Chr8:26579096 Cam10g0286 Cam-Chr10:4935908 9.60E-76 dispersed
Cam01g0394 Cam-Chr1:4370651 Cam10g0286 Cam-Chr10:4935908 6.40E-87 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Cam10g0286 . 30 180 PRT Gene Family AT1G80050 74.8 5.4e-61 230.7
Cam08g1804 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Cam08g2118 . 110 259 PRT Gene Family AT1G80050 70.7 1.8e-56 215.7
Cam08g1804 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Cam01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cam08g2118 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Cam10g0286 . 8 145 PRT Gene Family AT5G11160 71.0 4.7e-52 201.1
Cam08g2118 . 81 262 PRT Gene Family AT1G27450 82.4 9.1e-81 296.6
Cam01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Cam10g0286 . 1 180 PRT Gene Family AT1G27450 70.6 9.4e-70 260.0
Cam08g1804 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Cam11g0406 . 72 556 PRT Gene Family AT2G16570 85.2 5.8e-243 837.0
Cam11g0406 . 72 556 PRT Gene Family AT4G34740 86.0 1.5e-243 839.0
Cam11g0406 . 27 529 PRT Gene Family AT4G38880 70.4 1.6e-199 692.6
Cam08g2118 . 81 262 PRT Gene Family AT1G27450 82.4 9.1e-81 296.6
Cam01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Cam10g0286 . 1 180 PRT Gene Family AT1G27450 70.6 9.4e-70 260.0
Cam08g1804 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Cam01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Cam10g0286 . 30 180 PRT Gene Family AT1G80050 74.8 5.4e-61 230.7
Cam08g1804 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Cam08g2118 . 110 259 PRT Gene Family AT1G80050 70.7 1.8e-56 215.7
Cam01g0394 . 6 104 PRT Gene Family AT4G22570 82.8 5.1e-44 173.7
Cam10g0286 . 5 97 PRT Gene Family AT4G22570 86.0 2.5e-43 171.4
Cam08g2118 . 86 177 PRT Gene Family AT4G22570 82.6 1.0e-39 159.5
Cam08g1804 . 11 100 PRT Gene Family AT4G22570 78.9 2.1e-37 151.8
Cam01g0394 . 1 96 PRT Gene Family AT4G12440 84.4 8.3e-41 162.9
Cam10g0286 . 1 96 PRT Gene Family AT4G12440 83.3 4.1e-40 160.6
Cam08g2118 . 81 176 PRT Gene Family AT4G12440 79.2 8.6e-38 152.9
Cam08g1804 . 4 99 PRT Gene Family AT4G12440 78.1 3.3e-37 151.0
Cam08g1804 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Cam01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cam08g2118 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Cam10g0286 . 8 145 PRT Gene Family AT5G11160 71.0 4.7e-52 201.1
Cam08g1161 . 1 186 PRT Gene Family AT1G71750 65.0 1.7e-69 259.2
Cam09g2188 . 43 495 PRT Gene Family AT1G55810 85.5 2.3e-226 781.6
Cam05g1338 . 19 482 PRT Gene Family AT1G55810 73.5 1.4e-199 692.6
Cam09g2188 . 92 508 PRT Gene Family AT3G27440 75.4 2.0e-184 642.1
Cam05g1338 . 80 482 PRT Gene Family AT3G27440 75.4 8.7e-180 626.7
Cam05g1338 . 1 482 PRT Gene Family AT3G27190 86.1 9.6e-247 849.4
Cam09g2188 . 39 494 PRT Gene Family AT3G27190 75.5 6.7e-208 720.3
Cam04g0797 . 3 288 PRT Gene Family AT3G53900 66.1 5.3e-107 384.4
Cam09g2188 . 29 495 PRT Gene Family AT4G26510 84.7 6.5e-232 800.0
Cam05g1338 . 11 482 PRT Gene Family AT4G26510 75.8 7.0e-210 726.9
Cam05g1338 . 1 482 PRT Gene Family AT5G40870 86.3 9.6e-247 849.4
Cam09g2188 . 39 497 PRT Gene Family AT5G40870 74.2 1.3e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139