Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0296 ATGTCATCTTCTTCGATTCCTAACACTTTCTCTCAAGTTCCTCCTCCTCTTCTTCCTCCTCCTTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACCGTTTTAGCGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGGCTTTGCTCACTCAACCCCTAACTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAACGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGACAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGGATTAAGGCTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA 582 45.02 MSSSSIPNTFSQVPPPLLPPPSSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHGFAHSTPNFLSPNTHNFLEEISNSNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGSSS 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5098968 5103204 - CaPI482276_10g002960.1 Cam10g0296 136959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0296 193 Pfam YABBY protein 22 190 IPR006780 GO:0007275(InterPro)
Cam10g0296 193 FunFam axial regulator YABBY 5-like 129 187 - -
Cam10g0296 193 Gene3D High mobility group box domain 132 186 IPR036910 -
Cam10g0296 193 CDD HMG-box_SF 145 181 - -
Cam10g0296 193 PANTHER PROTEIN YABBY 6-RELATED 23 192 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cam10g0296 193 SUPERFAMILY HMG-box 131 184 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1215 Cam-Chr6:23391851 Cam10g0296 Cam-Chr10:5098968 1.40E-39 dispersed
Cam10g0296 Cam-Chr10:5098968 Cam11g0240 Cam-Chr11:3903400 8.20E-40 dispersed
Cam01g0388 Cam-Chr1:4275557 Cam10g0296 Cam-Chr10:5098968 1.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52694 PF04690 YABBY 1.80E-69 CL0114 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0296 K25796 - csv:101219601 341.273