Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0296 | ATGTCATCTTCTTCGATTCCTAACACTTTCTCTCAAGTTCCTCCTCCTCTTCTTCCTCCTCCTTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACCGTTTTAGCGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGGCTTTGCTCACTCAACCCCTAACTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAACGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGACAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGGATTAAGGCTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA | 582 | 45.02 | MSSSSIPNTFSQVPPPLLPPPSSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHGFAHSTPNFLSPNTHNFLEEISNSNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGSSS | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5098968 | 5103204 | - | CaPI482276_10g002960.1 | Cam10g0296 | 136959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0296 | 193 | Pfam | YABBY protein | 22 | 190 | IPR006780 | GO:0007275(InterPro) | |
Cam10g0296 | 193 | FunFam | axial regulator YABBY 5-like | 129 | 187 | - | - | |
Cam10g0296 | 193 | Gene3D | High mobility group box domain | 132 | 186 | IPR036910 | - | |
Cam10g0296 | 193 | CDD | HMG-box_SF | 145 | 181 | - | - | |
Cam10g0296 | 193 | PANTHER | PROTEIN YABBY 6-RELATED | 23 | 192 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER) | |
Cam10g0296 | 193 | SUPERFAMILY | HMG-box | 131 | 184 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g1215 | Cam-Chr6:23391851 | Cam10g0296 | Cam-Chr10:5098968 | 1.40E-39 | dispersed | |
Cam10g0296 | Cam-Chr10:5098968 | Cam11g0240 | Cam-Chr11:3903400 | 8.20E-40 | dispersed | |
Cam01g0388 | Cam-Chr1:4275557 | Cam10g0296 | Cam-Chr10:5098968 | 1.70E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52694 | PF04690 | YABBY | 1.80E-69 | CL0114 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0296 | K25796 | - | csv:101219601 | 341.273 |