Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0307 ATGGAGTGTGCAGCAACTAAATCCACCGATATGCACTGCATTCTTACGCGCCGCCCTACAAAGCCCCGCCACCGCTCACCTCCAGAGACTCCCGCCGTCAAGCGCCTACCGGCCGATTCTTCTGCTACTCGCTCTTGTATTCTGGAGAAAGAGATTCTCGCCATGATAACGTTGGTTAGATTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGATTTAATTAGATGTTTTCATTCCGGAACGAATCTGAAATCCAATTCTCCGGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCAGCTTCCTTCGGTGCGGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCGTTTAGTTATGTGCCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATAGAGCCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGGATGTTTTGAAGGAGGCCAGGTTGAGATGTCTGAGGACAGTTGTTGTAGGGGATCTCAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTTGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGAAAGTGTTTGGTTTAGATGATATAGGCGAGGATGAAGATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTAAGAATATGCAAAATGATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGATACTGAAACTGTTTCCCCACCATCATGGAAATGA 1266 43.76 MECAATKSTDMHCILTRRPTKPRHRSPPETPAVKRLPADSSATRSCILEKEILAMITLVRFRNLSYKFRNETDLIRCFHSGTNLKSNSPDSSSSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVDVLKEARLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDDIGEDEDVEEGSVDGGLCKNMQNDDRGAWWDLSSDADTETVSPPSWK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5182386 5183707 - CaPI482276_10g003070.1 Cam10g0307 136970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0307 421 MobiDBLite consensus disorder prediction 1 37 - -
Cam10g0307 421 SUPERFAMILY beta-beta-alpha zinc fingers 172 198 IPR036236 -
Cam10g0307 421 ProSitePatterns Zinc finger C2H2 type domain signature. 175 196 IPR013087 -
Cam10g0307 421 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 85 413 - -
Cam10g0307 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
Cam10g0307 421 CDD PIN_LabA-like 183 314 - -
Cam10g0307 421 Gene3D - 87 333 - -
Cam10g0307 421 MobiDBLite consensus disorder prediction 14 30 - -
Cam10g0307 421 Pfam NYN domain 245 325 IPR021139 GO:0004540(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2215 Cam-Chr5:30449282 Cam10g0307 Cam-Chr10:5182386 1.50E-59 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52696 PF01936 NYN 8.10E-10 CL0280 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0307 - - - 0.0