Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0333 ATGGCATTTCTAAGGTCCACCGCAACAACAACTAGCCTTGCCATAGCAGCATCTGCTTTACCTGCAGCTTTCATCTTCACCAGCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCCCTTTTCATTTCTTTCAATCCTTCAAACCCAATTCCCTTTCTTTACATTACTCTTCATTTCCAACTCCAAATTCCTTCGGATTCATAAGAAACTTTGCCCCTCCACCCTCTGCTGTTCGCATGGAGACACCCACCTCGGAATCAATCTCTTCCTCTCAGAACAATGTTGATTTGCCTGAACTTTTGACAGAGTATATGGTGGATATGAAATGTGAGGGCTGCGTTAATGCCGTCAAGAACAAGTTACAGGGTGTTGATGGTGTAAAGAGTGTTGATGTGGACTTGAGCAATCAAGTGGTTAGGATACTGGGCACAACACCTGTGAAGACAATGACTGAAGCTTTGGAGCAGACAGGTCGAAAAGCTCGGTTAATTGGGCAAGGGGTTCCTGAGGATTTCTTAGTTTCTGCTGCTGTTGCTGAATTTAAAGGCCCGAATATATTTGGCGTGGTTCGTTTGGCTCAGGTAAATATGGAATTGGCCAGGGTTGAAGCCAACTTTAGTGGATTGTCACCTGGAAAACATGGTTGGTCAATCAATGAATTTGGTGATCTGACAAGAGGCGCTGCTAGCACAGGAAAAATCTTTGGTTCTGCAGATTCTGGCCCTAGTAATGAGCCGCTGGGTGACCTGGGAACATTAGATGCTGATGAAAAGGGCGAAGCCTTTTTCTCTGGTGTCAAACAGAAGCTGCGAGTTTCTGATCTTATCGGACGATCAATAGCCGTGTATGAGACTGAAGACAAATCAGATCCAGGCATTGCAGCAGCGGTAGTAGCTCGAAGTGCCGGTGTCGGAGAGAACTACAAGAAGCTATGTACCTGTGATGGGACTACCATATGGGAATCAAGTAACATGGATTTTGTTACTAGCAAAGTCTAA 1002 45.01 MAFLRSTATTTSLAIAASALPAAFIFTSPSSSSSSSSSSLPFHFFQSFKPNSLSLHYSSFPTPNSFGFIRNFAPPPSAVRMETPTSESISSSQNNVDLPELLTEYMVDMKCEGCVNAVKNKLQGVDGVKSVDVDLSNQVVRILGTTPVKTMTEALEQTGRKARLIGQGVPEDFLVSAAVAEFKGPNIFGVVRLAQVNMELARVEANFSGLSPGKHGWSINEFGDLTRGAASTGKIFGSADSGPSNEPLGDLGTLDADEKGEAFFSGVKQKLRVSDLIGRSIAVYETEDKSDPGIAAAVVARSAGVGENYKKLCTCDGTTIWESSNMDFVTSKV 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5475196 5479923 - CaPI482276_10g003330.1 Cam10g0333 136996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0333 333 Pfam Heavy-metal-associated domain 106 161 IPR006121 GO:0046872(InterPro)
Cam10g0333 333 SUPERFAMILY HMA, heavy metal-associated domain 102 165 IPR036163 GO:0046872(InterPro)
Cam10g0333 333 ProSiteProfiles Heavy-metal-associated domain profile. 100 163 IPR006121 GO:0046872(InterPro)
Cam10g0333 333 Pfam Copper/zinc superoxide dismutase (SODC) 189 290 IPR001424 GO:0006801(InterPro)|GO:0046872(InterPro)
Cam10g0333 333 Gene3D Superoxide dismutase, copper/zinc binding domain 171 301 IPR036423 GO:0006801(InterPro)|GO:0046872(InterPro)
Cam10g0333 333 SUPERFAMILY Cu,Zn superoxide dismutase-like 166 324 IPR036423 GO:0006801(InterPro)|GO:0046872(InterPro)
Cam10g0333 333 FunFam Copper chaperone for superoxide dismutase 93 170 - -
Cam10g0333 333 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 30 332 IPR024134 GO:0005507(InterPro)|GO:0005737(PANTHER)|GO:0016532(PANTHER)
Cam10g0333 333 FunFam Copper chaperone for superoxide dismutase 174 301 - -
Cam10g0333 333 Gene3D - 91 170 - -
Cam10g0333 333 CDD HMA 104 163 IPR006121 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0333 K04569 - - csv:101206552 554.673
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33