Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0338 ATGGCTTCCCATTTCCCTCGTCGGAGCTTTGTCGCCGTCATCTTCTTCTTGTCGTTTATGATGCCGGAGATGACAATGAAATCAGTGCTCGCCATCTTTCGACCAAGCCCTTGGCAGCTCGCCCATGCCACCTTCTATGGTGATGAGACAGCATCAGAAACAATGGGAGGAGCTTGTGGTTATGGAAACTTGTTCACAAACGGCTACGGCGTCGACACGGTGGCTCTAAGCTCTACCCTCTTTAATAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCGCCCAATCCAAAGCTTGTTACCCTAATGTTGCTTTCACGACGGTGACAGCGACCAACCTTTGCCCGCCGAATTGGGCCAAACCTTCCAATGCCGGTGGATGGTGCAACCCACCGAGGGTTCACTTCGACATGTCAAAGCCAGCCTTCATGAAGATTGCCAACTGGAAGGCCGGGATCATCCCCGTCGCGTACCGACGAGTACCGTGCGGCAAAAAAGGTGGCCTTCGGTTCACACTTCAGGGAAATGGCTACTGGCTTTTGGCGTACGTAATGAACGTCGGCGGTGGCGGAGACGTGTCGGGAATGTGGGTGAAGGGTAGCAAAACAGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCAACTTTGGTTGGCCAATCTTTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAATGTTGCACCTTCTAATTGGAGGTTTGGTTCGACCTACAATGCCAACATCAACTTTCGCTAA 795 50.06 MASHFPRRSFVAVIFFLSFMMPEMTMKSVLAIFRPSPWQLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCAQSKACYPNVAFTTVTATNLCPPNWAKPSNAGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSNWRFGSTYNANINFR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5511833 5513389 - CaPI482276_10g003380.1 Cam10g0338 137001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0338 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Cam10g0338 264 CDD DPBB_EXPA_N 37 164 - -
Cam10g0338 264 Gene3D - 23 164 IPR036908 -
Cam10g0338 264 SUPERFAMILY Barwin-like endoglucanases 29 187 IPR036908 -
Cam10g0338 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Cam10g0338 264 SMART dpbb_1 73 159 IPR007112 -
Cam10g0338 264 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Cam10g0338 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Cam10g0338 264 PANTHER EXPANSIN-A15 23 259 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Cam10g0338 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Cam10g0338 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Cam10g0338 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Cam10g0338 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Cam10g0338 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Cam10g0338 264 Gene3D - 165 264 IPR036749 -
Cam10g0338 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Cam10g0338 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0338 Cam-Chr10:5511833 Cam11g0593 Cam-Chr11:7488743 1.80E-69 dispersed
Cam01g0330 Cam-Chr1:3691324 Cam10g0338 Cam-Chr10:5511833 3.90E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0338 - - - 0.0