Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0340 ATGGCTGGTCGAATTTTTGAAACCTTGTCCTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCCTCTGGAAATGCTTCATTGAAGATCTTGCTATTGCATGGTTATTTAGACATTTGGGTTAAAGGAGCTAAGAACCTTCCCAATTTGGATATGTTTCACAAGACTCTTGGGGATATGTTTTCAAAAGTGTCCTTTAAGGGTTCCAAAAACAGTGATGGGCAAAAGCCTCAAAAAGTTACTAGTGATCCCTATGTGACTATTTCTGTGTCAAATGCTGTGATTGGAAGAACTTTTGTGATTGATAACAATGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCATTATGGTGCTGAGGTGCATTTTGTTGTTAAAGACCATGATGTTGTAGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAAGAAGTGTATTCCGGAGCCATAGTTGATGGAACTTACCCAATCTTAAATAGCAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTCCGGCTGACCAAGCGGCCATTTTTCATGGTGGAATGTATGCGTCTCCTGATCATCAGGGAGTTTCAGGCACATATTTCCCTCTTAGGAAGGGGGGTAAAGTTACGTTGTACCAAGATGCCCATGTTGACGATGGTTGTCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTCAATATGAACATAGGAGCTGCTGGGATGACATCTCTGAATCGATTAGTCAGGCTCGCCGTTTGATCTATATTACAGGCTGGTCCGTGTACCATAGTGTTAAATTGGTTAGAGATGGAACGGCCAAAGAATGTATGTTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTATTGCTTCTTATATGGGACGATCCAACTTCAACTAGTATGTTGGGATATAAGACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGGTTTTTTAAGAACTCATCAGTCCAAGTGATTTTGTGCCCACGATCAGGTGGAAAAGGTCATAGTTGGATTAAAAAACAGGAAGCTGGAACCATCTATACCCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGAAATTACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCGAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAATTTTACGGGACCAACTACGGGCTGTCCAAGAGAACCATGGCATGATTTGCACTCCAAGATTGATGGTCCAGCGGCGTATGACGTCCTTGCAAATTTTGAGGACCGCTGGATGAGAGCTTCAGAGCCTCATGGGCTTAAGAAGCTAAAGAGGTTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATAACTGATGCTTCTCAACTTTGTAATAATGATCCAGAAGCTTGGAACGTCCAGATTTTTCGCTCAATCGATTCCAACTCCGTAAAAGGATTTCCTGACGAACCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATTCGAGCTGCTCAACGCTTCATTTACATCGAAAACCAGTACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTAGGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTGGTTATTCCCATGTGGCCAGAAGGTGCTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATACAAGGCGTTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTAAATTTCTTTTGCCTTGGAAACCGTGAGGTGCTCGATGTCAGAGACGGTGTTGAAGCCGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTACGTCTTATTGGGATCGGCAAATATCAATCAACGGTCCCTTGAAGGTACCAGAGACACTGAAATAGCAATGGGCGCATATCAGCCCCGTCATACATGGTCATCGAGAAAACGCTCGAGCCCACGTGGTCAGGTCTATGGATATAGAATGTCTTTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTTGAAAGACCAGAGAGTATTGAATGTGTAAGAAGAATCAGGTCATTGGGTGAGAGAAATTGGAGGCAATATGCAGCTGAGGAAGTGAGTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTGACCCATCTTCCTGGTTCTGAAACCTTCCCTGACCTTGGTGGCAACATATTAGGAACATTCACAGTCATACAAGAAAATCTTACGATTTGA 2556 41.51 MAGRIFETLSFGGSQHGQGNQSLPFSSGNASLKILLLHGYLDIWVKGAKNLPNLDMFHKTLGDMFSKVSFKGSKNSDGQKPQKVTSDPYVTISVSNAVIGRTFVIDNNENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEEVYSGAIVDGTYPILNSSRKPCKPGAVLSLSIQYTPADQAAIFHGGMYASPDHQGVSGTYFPLRKGGKVTLYQDAHVDDGCLPTDFRLHGGVQYEHRSCWDDISESISQARRLIYITGWSVYHSVKLVRDGTAKECMLGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEDRWMRASEPHGLKKLKRLHEDVLLKIERIPEILGITDASQLCNNDPEAWNVQIFRSIDSNSVKGFPDEPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSTPIQRILFWQSRTMQMMYEMIYKALEEVGLHKTYEPQDYLNFFCLGNREVLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPRHTWSSRKRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYAAEEVSEMRSHLLKYPLQVDPTGKVTHLPGSETFPDLGGNILGTFTVIQENLTI 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5529311 5535226 + CaPI482276_10g003400.1 Cam10g0340 137003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0340 851 SMART C2_3c 40 162 IPR000008 -
Cam10g0340 851 FunFam Phospholipase D 512 742 - -
Cam10g0340 851 Pfam Phospholipase D Active site motif 698 723 IPR001736 GO:0003824(InterPro)
Cam10g0340 851 Pfam Phospholipase D Active site motif 366 396 IPR001736 GO:0003824(InterPro)
Cam10g0340 851 FunFam Phospholipase D delta 241 478 - -
Cam10g0340 851 PANTHER PHOSPHOLIPASE D 36 841 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cam10g0340 851 ProSiteProfiles C2 domain profile. 15 163 IPR000008 -
Cam10g0340 851 Gene3D Endonuclease Chain A 239 478 - -
Cam10g0340 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824(InterPro)
Cam10g0340 851 CDD C2_plant_PLD 35 186 - -
Cam10g0340 851 Pfam Phospholipase D C terminal 771 841 IPR024632 -
Cam10g0340 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824(InterPro)
Cam10g0340 851 Pfam C2 domain 39 164 IPR000008 -
Cam10g0340 851 SUPERFAMILY Phospholipase D/nuclease 515 783 - -
Cam10g0340 851 PIRSF PLD_plant 26 851 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cam10g0340 851 Gene3D Endonuclease Chain A 507 759 - -
Cam10g0340 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Cam10g0340 851 Gene3D C2 domain 26 186 IPR035892 -
Cam10g0340 851 SMART pld_4 696 723 IPR001736 GO:0003824(InterPro)
Cam10g0340 851 SMART pld_4 364 399 IPR001736 GO:0003824(InterPro)
Cam10g0340 851 SUPERFAMILY Phospholipase D/nuclease 206 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1583 Cam-Chr2:28746016 Cam10g0340 Cam-Chr10:5529311 7.40E-32 dispersed
Cam06g0210 Cam-Chr6:3908553 Cam10g0340 Cam-Chr10:5529311 0.00E+00 dispersed
Cam09g0275 Cam-Chr9:3303544 Cam10g0340 Cam-Chr10:5529311 1.10E-199 dispersed
Cam10g0340 Cam-Chr10:5529311 Cam08g1871 Cam-Chr8:24724885 6.00E-252 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0340 K01115 - csv:101208016 1681.38