Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0345 | ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTGAGACTGCAAAAGCGCCATGA | 996 | 44.88 | MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5583651 | 5591724 | - | CaPI482276_10g003450.1 | Cam10g0345 | 137008 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0345 | 331 | FunFam | replication factor C subunit 2 | 235 | 327 | - | - | |
Cam10g0345 | 331 | SMART | AAA_5 | 45 | 171 | IPR003593 | GO:0016887(InterPro) | |
Cam10g0345 | 331 | Pfam | Replication factor C C-terminal domain | 235 | 320 | IPR013748 | - | |
Cam10g0345 | 331 | Gene3D | - | 235 | 327 | - | - | |
Cam10g0345 | 331 | Gene3D | - | 7 | 170 | IPR027417 | - | |
Cam10g0345 | 331 | CDD | AAA | 28 | 165 | - | - | |
Cam10g0345 | 331 | Gene3D | - | 171 | 234 | - | - | |
Cam10g0345 | 331 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 13 | 324 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
Cam10g0345 | 331 | CDD | HLD_clamp_RFC | 170 | 232 | IPR047854 | - | |
Cam10g0345 | 331 | FunFam | Replication factor C subunit 4 | 171 | 234 | - | - | |
Cam10g0345 | 331 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 234 | 325 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Cam10g0345 | 331 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 11 | 233 | IPR027417 | - | |
Cam10g0345 | 331 | FunFam | Replication factor C subunit 4 | 7 | 170 | - | - | |
Cam10g0345 | 331 | Pfam | ATPase family associated with various cellular activities (AAA) | 49 | 167 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g1021 | Cam-Chr8:16430892 | Cam10g0345 | Cam-Chr10:5583651 | 3.80E-54 | dispersed | |
Cam10g0345 | Cam-Chr10:5583651 | Cam11g1618 | Cam-Chr11:28950159 | 1.20E-46 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0345 | K10755 | - | csv:101208984 | 635.18 |