Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0345 ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCCGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTGAGACTGCAAAAGCGCCATGA 996 44.88 MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5583651 5591724 - CaPI482276_10g003450.1 Cam10g0345 137008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0345 331 FunFam replication factor C subunit 2 235 327 - -
Cam10g0345 331 SMART AAA_5 45 171 IPR003593 GO:0016887(InterPro)
Cam10g0345 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Cam10g0345 331 Gene3D - 235 327 - -
Cam10g0345 331 Gene3D - 7 170 IPR027417 -
Cam10g0345 331 CDD AAA 28 165 - -
Cam10g0345 331 Gene3D - 171 234 - -
Cam10g0345 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 13 324 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cam10g0345 331 CDD HLD_clamp_RFC 170 232 IPR047854 -
Cam10g0345 331 FunFam Replication factor C subunit 4 171 234 - -
Cam10g0345 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cam10g0345 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Cam10g0345 331 FunFam Replication factor C subunit 4 7 170 - -
Cam10g0345 331 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1021 Cam-Chr8:16430892 Cam10g0345 Cam-Chr10:5583651 3.80E-54 dispersed
Cam10g0345 Cam-Chr10:5583651 Cam11g1618 Cam-Chr11:28950159 1.20E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0345 K10755 - csv:101208984 635.18