Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0346 ATGGGACGGGGCCGGGGCCGGGGCGGGTGGGGGTCCCCATCGCCAATGGGACGGGGTCGGGGCCGAGGCGGGTGGGGGTCCCCATCGCCACCCCATGGCAAGATGATTCAATTTCCCGTTCCAATTTGGCTGTTTCTTGTTCGGAATGAAGCAAGTCAATTCAAGTACTTAGGGTTTGATTCATTGTTTTGGGAATTTCAAATGGCATCTTCAAGGTCCCCGAATGGATCTTCTGATGATATCCTCGATACCTCCCCTTTGATGGGGAATTCGAACCGGTCGCCGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTACGTCAGGCGGCGAGGTTTCTTAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTTATTCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGCAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGCATTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGACGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGCTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGATAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACCATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGTGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTTGGTGGGATAATGACCGAGTGTGGTACAGATTCACCCATTGAACGCGCCCTCTCGCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTAAGTTGTGTGTAGTTGTGAAAGAGATCAATCAGCAAACTCAGTATAGGGCCCTTTCTTTTGCTGCAGTTGCTATTGTTGTTGTAGTGAATATTATTCTTTGCTGTAGTTCTTGCTCTGCTCAGGTTGCTCGTGTAAATGGCGATATGAAAGGTTCTCTGTAA 1458 48.7 MGRGRGRGGWGSPSPMGRGRGRGGWGSPSPPHGKMIQFPVPIWLFLVRNEASQFKYLGFDSLFWEFQMASSRSPNGSSDDILDTSPLMGNSNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDDNDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKFSTDVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCKLCVVVKEINQQTQYRALSFAAVAIVVVVNIILCCSSCSAQVARVNGDMKGSL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5592512 5601207 + CaPI482276_10g003460.1 Cam10g0346 137009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0346 485 MobiDBLite consensus disorder prediction 71 103 - -
Cam10g0346 485 ProSiteProfiles Zinc finger RING-type profile. 395 435 IPR001841 -
Cam10g0346 485 Pfam Ring finger domain 394 435 IPR001841 -
Cam10g0346 485 MobiDBLite consensus disorder prediction 1 32 - -
Cam10g0346 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 440 IPR013083 -
Cam10g0346 485 SMART ring_2 395 435 IPR001841 -
Cam10g0346 485 MobiDBLite consensus disorder prediction 71 95 - -
Cam10g0346 485 SUPERFAMILY RING/U-box 386 438 - -
Cam10g0346 485 PANTHER TARGET OF ERK KINASE MPK-1 109 435 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0209 Cam-Chr5:2119364 Cam10g0346 Cam-Chr10:5592512 2.90E-121 dispersed
Cam10g0346 Cam-Chr10:5592512 Cam10g1627 Cam-Chr10:30085983 1.50E-66 dispersed
Cam10g0346 Cam-Chr10:5592512 Cam10g2066 Cam-Chr10:34436786 1.60E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0346 - - - 0.0