Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0357 ATGAAGTCTGAACGAGCTTCTCATCATAATCCCACGAGAGCAGTTTGCAGAAAGTTTCTTCAAGTGTCAGAATCACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTTGTGTGCTTTGGTTTCTGTGAAGCGTTACATTCATCAAGCTCCTGTTTTTCCCCATACTTTGGAGTGGTGAACTGGCTTGGGGGGGAGAAGAAGTTGTATGAGTTCTGCTGGAGACTTTCGACCAGGCCAGAAGTCTCAGTTTCAGGAATCTCCATAAAGATCAAGTTTTACTTAGCCTTCCAATATCCCCTTCTTGTCCATGTGATGATCCATATGGAAGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCACAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTGATGAAAGGACCAGGGCTTACAAGAAAGTGGTTGATTTCAGAGGGACAGCTAACGAGTTAGGTTCTCGCGTTCTCGATTGTCTCAAAATTTCGAAGCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGCACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGCGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCGTCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGAAATTTTGAAGAAAAGAAGGTTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCATTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAATAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTATAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAACGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGTACTTCAGTCAAGTTGCCTTTCACTTAGCCTGTTGTCTTTATATTTGCGCAACGCCGAAAAGGTTTTGGTGTTTCCTTTGCTGACCTGTTGCACTACTACTCTTGATGAATTTTCACTTCGACTTCAATGA 4809 40.4 MKSERASHHNPTRAVCRKFLQVSESLPPLAEQETSRNFVSGVVCFGFCEALHSSSSCFSPYFGVVNWLGGEKKLYEFCWRLSTRPEVSVSGISIKIKFYLAFQYPLLVHVMIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLINGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLVLQSSCLSLSLLSLYLRNAEKVLVFPLLTCCTTTLDEFSLRLQ 1602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5748854 5765856 - CaPI482276_10g003570.1 Cam10g0357 137020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0357 1602 Pfam RNA polymerase Rpb1, domain 4 815 873 IPR007083 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam10g0357 1602 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 125 1398 - -
Cam10g0357 1602 Pfam RNA polymerase Rpb1, domain 2 439 597 IPR000722 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam10g0357 1602 PANTHER DNA-DIRECTED RNA POLYMERASE 128 1399 IPR045867 GO:0001055(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005665(PANTHER)|GO:0006351(InterPro)
Cam10g0357 1602 CDD RNAP_IV_RPD1_N 137 973 IPR040403 -
Cam10g0357 1602 Gene3D RNA polymerase Rpb1, domain 3 606 754 IPR042102 -
Cam10g0357 1602 Gene3D - 434 605 - -
Cam10g0357 1602 Gene3D - 1469 1560 - -
Cam10g0357 1602 Gene3D - 772 926 IPR038120 -
Cam10g0357 1602 Gene3D RNA polymerase ii 472 524 - -
Cam10g0357 1602 SMART rpolaneu7 339 626 IPR006592 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam10g0357 1602 Pfam Protein of unknown function (DUF3223) 1485 1558 - -
Cam10g0357 1602 Pfam RNA polymerase Rpb1, domain 3 601 749 IPR007066 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam10g0357 1602 Gene3D RNA polymerase II, clamp domain 125 224 IPR044893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0357 K16250 - - csv:101214578 2722.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0357 Cam-Chr10:5748854 Cam10g1686 Cam-Chr10:30843433 8.30E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40