Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0361 ATGGCCTCCACCACCTCCTCCAACAGACATGATCACTACAAAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCCTTGAAAAAAGTTGATGATCAAGGACAAAACACTGACCACAGCTTTCACCACCAGTCTCTTCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCCGAGGGAATGCTGTTGTCCCCACCACGAATGACCTCGTCGCCGTCCCGACATGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 513 54.39 MASTTSSNRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGQNTDHSFHHQSLPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMTSSPSRHDYYSWNSSGDGNLWSYH 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5855238 5855750 - CaPI482276_10g003610.1 Cam10g0361 137024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0361 170 SMART rav1_2 12 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0361 170 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 169 IPR045277 GO:0003700(InterPro)
Cam10g0361 170 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0361 170 CDD AP2 12 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0361 170 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0361 170 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677(InterPro)
Cam10g0361 170 FunFam Ethylene-responsive transcription factor 2 11 69 - -
Cam10g0361 170 Pfam AP2 domain 12 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0933 Cam-Chr5:8444587 Cam10g0361 Cam-Chr10:5855238 1.90E-41 dispersed
Cam10g0361 Cam-Chr10:5855238 Cam10g1890 Cam-Chr10:32989857 1.40E-35 dispersed
Cam10g0361 Cam-Chr10:5855238 Cam01g0313 Cam-Chr1:3470650 2.00E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52698 PF00847 AP2 5.60E-11 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0361 - - - 0.0