Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0361 | ATGGCCTCCACCACCTCCTCCAACAGACATGATCACTACAAAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCCTTGAAAAAAGTTGATGATCAAGGACAAAACACTGACCACAGCTTTCACCACCAGTCTCTTCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCCGAGGGAATGCTGTTGTCCCCACCACGAATGACCTCGTCGCCGTCCCGACATGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG | 513 | 54.39 | MASTTSSNRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGQNTDHSFHHQSLPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMTSSPSRHDYYSWNSSGDGNLWSYH | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5855238 | 5855750 | - | CaPI482276_10g003610.1 | Cam10g0361 | 137024 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0361 | 170 | SMART | rav1_2 | 12 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0361 | 170 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 6 | 169 | IPR045277 | GO:0003700(InterPro) | |
Cam10g0361 | 170 | Gene3D | AP2/ERF domain | 11 | 69 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0361 | 170 | CDD | AP2 | 12 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0361 | 170 | ProSiteProfiles | AP2/ERF domain profile. | 12 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam10g0361 | 170 | SUPERFAMILY | DNA-binding domain | 12 | 69 | IPR016177 | GO:0003677(InterPro) | |
Cam10g0361 | 170 | FunFam | Ethylene-responsive transcription factor 2 | 11 | 69 | - | - | |
Cam10g0361 | 170 | Pfam | AP2 domain | 12 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0933 | Cam-Chr5:8444587 | Cam10g0361 | Cam-Chr10:5855238 | 1.90E-41 | dispersed | |
Cam10g0361 | Cam-Chr10:5855238 | Cam10g1890 | Cam-Chr10:32989857 | 1.40E-35 | dispersed | |
Cam10g0361 | Cam-Chr10:5855238 | Cam01g0313 | Cam-Chr1:3470650 | 2.00E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52698 | PF00847 | AP2 | 5.60E-11 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0361 | - | - | - | 0.0 |