Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0392 | ATGGATATATCAAATGACGTTAGAATAAAAACATGTCTACCTTCTCCTACTTTTGGAACGACTTCTGATGTGTACTATGAAGATATAATGATGGTCAATGTTAGCAATCCGATTATCATAGATCAAGAGTATTGCCCATACAACCAATCCGATCGACGACAACCGAAGCTTCCCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCGACCCTGAGTTGGCTTCAAGTCTCTTCAACCTTTTTTGCTTTGCTTTTATCTGCTATTTACGGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTCTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGACGAATCTTTATTCTTCCGTTTATGAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATTGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGTCTGAAAGCGTAG | 1473 | 41.28 | MDISNDVRIKTCLPSPTFGTTSDVYYEDIMMVNVSNPIIIDQEYCPYNQSDRRQPKLPFWFLPLQAKSSRKFCDPELASSLFNLFCFAFICYLRFQVAKRMLESSAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYEEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6250148 | 6256759 | + | CaPI482276_10g003920.1 | Cam10g0392 | 137055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0392 | 490 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 97 | 478 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Cam10g0392 | 490 | Pfam | Sodium/calcium exchanger protein | 330 | 472 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam10g0392 | 490 | Pfam | Sodium/calcium exchanger protein | 141 | 296 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam10g0392 | 490 | SUPERFAMILY | Pectin lyase-like | 5 | 53 | IPR011050 | - | |
Cam10g0392 | 490 | Gene3D | - | 2 | 59 | IPR012334 | - | |
Cam10g0392 | 490 | Gene3D | - | 317 | 474 | IPR044880 | - | |
Cam10g0392 | 490 | Gene3D | - | 170 | 312 | IPR044880 | - | |
Cam10g0392 | 490 | FunFam | Vacuolar cation/proton exchanger | 318 | 474 | - | - | |
Cam10g0392 | 490 | NCBIfam | calcium/proton exchanger | 123 | 473 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Cam10g0392 | 490 | Pfam | Glycosyl hydrolases family 28 | 4 | 52 | IPR000743 | GO:0004650(InterPro)|GO:0005975(InterPro) | |
Cam10g0392 | 490 | FunFam | Vacuolar cation/proton exchanger | 170 | 309 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1103 | Cam-Chr2:20285733 | Cam10g0392 | Cam-Chr10:6250148 | 1.60E-158 | dispersed | |
Cam03g0076 | Cam-Chr3:1726218 | Cam10g0392 | Cam-Chr10:6250148 | 1.40E-86 | dispersed | |
Cam07g1142 | Cam-Chr7:25850416 | Cam10g0392 | Cam-Chr10:6250148 | 1.10E-152 | dispersed | |
Cam10g0392 | Cam-Chr10:6250148 | Cam10g2167 | Cam-Chr10:35147416 | 1.60E-92 | dispersed | |
Cam10g0392 | Cam-Chr10:6250148 | Cam04g0714 | Cam-Chr4:21511717 | 2.30E-94 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0392 | K07300 | - | csv:101205761 | 641.728 |