Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0392 ATGGATATATCAAATGACGTTAGAATAAAAACATGTCTACCTTCTCCTACTTTTGGAACGACTTCTGATGTGTACTATGAAGATATAATGATGGTCAATGTTAGCAATCCGATTATCATAGATCAAGAGTATTGCCCATACAACCAATCCGATCGACGACAACCGAAGCTTCCCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCGACCCTGAGTTGGCTTCAAGTCTCTTCAACCTTTTTTGCTTTGCTTTTATCTGCTATTTACGGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTCTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGACGAATCTTTATTCTTCCGTTTATGAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATTGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGTCTGAAAGCGTAG 1473 41.28 MDISNDVRIKTCLPSPTFGTTSDVYYEDIMMVNVSNPIIIDQEYCPYNQSDRRQPKLPFWFLPLQAKSSRKFCDPELASSLFNLFCFAFICYLRFQVAKRMLESSAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYEEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6250148 6256759 + CaPI482276_10g003920.1 Cam10g0392 137055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0392 490 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 97 478 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cam10g0392 490 Pfam Sodium/calcium exchanger protein 330 472 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g0392 490 Pfam Sodium/calcium exchanger protein 141 296 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g0392 490 SUPERFAMILY Pectin lyase-like 5 53 IPR011050 -
Cam10g0392 490 Gene3D - 2 59 IPR012334 -
Cam10g0392 490 Gene3D - 317 474 IPR044880 -
Cam10g0392 490 Gene3D - 170 312 IPR044880 -
Cam10g0392 490 FunFam Vacuolar cation/proton exchanger 318 474 - -
Cam10g0392 490 NCBIfam calcium/proton exchanger 123 473 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cam10g0392 490 Pfam Glycosyl hydrolases family 28 4 52 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cam10g0392 490 FunFam Vacuolar cation/proton exchanger 170 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1103 Cam-Chr2:20285733 Cam10g0392 Cam-Chr10:6250148 1.60E-158 dispersed
Cam03g0076 Cam-Chr3:1726218 Cam10g0392 Cam-Chr10:6250148 1.40E-86 dispersed
Cam07g1142 Cam-Chr7:25850416 Cam10g0392 Cam-Chr10:6250148 1.10E-152 dispersed
Cam10g0392 Cam-Chr10:6250148 Cam10g2167 Cam-Chr10:35147416 1.60E-92 dispersed
Cam10g0392 Cam-Chr10:6250148 Cam04g0714 Cam-Chr4:21511717 2.30E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0392 K07300 - csv:101205761 641.728