Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0396 ATGACTACCACGGCGGAGGAAACAACCATCACTTTCTCCTCCGATCATGGCGCCGCCCAAGAACAACAACACTACGCTTACGCTATGCAGCTGGTTACCTCATCGGTGCTGCCAATGACACTCCAAGCAGCGTTCGAGCTCGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAACCTCTCTCCGCCAGAGATAGCGGCTGAGATAACTACGACAAACCCGGATGCAGCGTCGATGATTGATCGGATGTTGAGGCTTCTCGCCAGCCACTCGGTGGTGGGATGCTCTGTGGGATTTGATGAACATGGGAAAATGCAGAGACTTTATAGCCTTACCCCAGTTTCTAAGTATTATGTTCGTAATCAAGATGGTGTCTCGTTGGGTCCAACTTTGTCATTGATTCAAGATAAAGTCTTTCTCCATAGCTGGAGTGAGCTAAAGAATGCAGTTATTGAAGGAGGAGTTCCTTTCAATAGGGCTCATGGGGGAGTTCATGCCTTTGAATATCCAGGCTTGGATCCAAGATTTAACCAAGTTTTCAATGCTGCAATGATAAATCACACCACTATAGCCATCAAGAAAATTGTCAAATCCTACAAAGGCTTTGAAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGGCCACCCTTCAAATCATCACTTCTACATATCCTTCCATCAAAGCCATCAACTTCGACTTACCTCATGTCATTCGCGATGCCCCTCCTTATCCTGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGACGAGCATTGTGTAAAGTTATTGAAAAATTGCTACGTTGCGATCCCAAATGAAGGAAAGGTAATCATAGTGGACTCAGTGGTTCCAACAGTACCTGAAACCACAGATATAACAAAATGCATTGCCCAAGGCGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAGCGAACTCGAGATGAATTCGAGGCCCTCGCAACCAAAGCTGGGTTTAAACATGTCATATTCCAGTGCTTTGTGTCTAATCTCTGGGTTATAGAGTTTCTTAAAAATTAA 1113 45.28 MTTTAEETTITFSSDHGAAQEQQHYAYAMQLVTSSVLPMTLQAAFELGVFEILAKAGDGANLSPPEIAAEITTTNPDAASMIDRMLRLLASHSVVGCSVGFDEHGKMQRLYSLTPVSKYYVRNQDGVSLGPTLSLIQDKVFLHSWSELKNAVIEGGVPFNRAHGGVHAFEYPGLDPRFNQVFNAAMINHTTIAIKKIVKSYKGFENIKQLVDVGGGLGATLQIITSTYPSIKAINFDLPHVIRDAPPYPGVEHVGGDMFEKVPNGDAVFMKWILHDWSDEHCVKLLKNCYVAIPNEGKVIIVDSVVPTVPETTDITKCIAQGDVLMMTQNPGGKERTRDEFEALATKAGFKHVIFQCFVSNLWVIEFLKN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6319707 6322362 - CaPI482276_10g003960.1 Cam10g0396 137059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0396 370 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983(InterPro)
Cam10g0396 370 FunFam Caffeic acid 3-O-methyltransferase 5 120 - -
Cam10g0396 370 PIRSF O-mtase 6 369 IPR016461 GO:0008168(InterPro)
Cam10g0396 370 Gene3D - 6 120 IPR036388 -
Cam10g0396 370 FunFam Caffeic acid O-methyltransferase 121 369 - -
Cam10g0396 370 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171(InterPro)
Cam10g0396 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 367 IPR029063 -
Cam10g0396 370 SUPERFAMILY Winged helix DNA-binding domain 20 123 IPR036390 -
Cam10g0396 370 PANTHER O-METHYLTRANSFERASE 24 356 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Cam10g0396 370 Gene3D Vaccinia Virus protein VP39 121 369 IPR029063 -
Cam10g0396 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 369 IPR016461 GO:0008168(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1755 Cam-Chr7:32238514 Cam10g0396 Cam-Chr10:6319707 8.40E-115 dispersed
Cam10g0396 Cam-Chr10:6319707 Cam10g1371 Cam-Chr10:27286887 2.00E-31 dispersed
Cam10g0395 Cam-Chr10:6302866 Cam10g0396 Cam-Chr10:6319707 2.40E-176 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0396 K13066 - csv:101214916 604.364