Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0401 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 56.44 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6374111 6374638 + CaPI482276_10g004010.1 Cam10g0401 137064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0401 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cam10g0401 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982(InterPro)
Cam10g0401 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982(InterPro)
Cam10g0401 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cam10g0401 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cam10g0401 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cam10g0401 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cam10g0401 175 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Cam10g0401 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0401 175 MobiDBLite consensus disorder prediction 152 175 - -
Cam10g0401 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0956 Cam-Chr7:23435449 Cam10g0401 Cam-Chr10:6374111 4.60E-42 dispersed
Cam09g0608 Cam-Chr9:5996688 Cam10g0401 Cam-Chr10:6374111 3.30E-39 dispersed
Cam10g0401 Cam-Chr10:6374111 Cam10g2025 Cam-Chr10:34092939 1.30E-36 dispersed
Cam10g0401 Cam-Chr10:6374111 Cam02g1439 Cam-Chr2:27227124 3.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52704 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0401 K08065 - csv:101204640 310.457