Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0419 ATGTTGCTGACCTCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCACTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA 627 56.46 MLLTSNKPTSANNTPNSNHHHSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6543109 6543735 + CaPI482276_10g004190.1 Cam10g0419 137082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0419 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cam10g0419 208 SUPERFAMILY Histone-fold 55 148 IPR009072 GO:0046982(InterPro)
Cam10g0419 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 122 IPR003958 -
Cam10g0419 208 MobiDBLite consensus disorder prediction 1 48 - -
Cam10g0419 208 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0419 208 FunFam Nuclear transcription factor Y subunit B-6 47 159 - -
Cam10g0419 208 Gene3D Histone, subunit A 45 159 IPR009072 GO:0046982(InterPro)
Cam10g0419 208 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Cam10g0419 208 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Cam10g0419 208 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0419 K08065 - - csv:116402762 345.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0419 Cam-Chr10:6543109 Cam10g2025 Cam-Chr10:34092939 6.50E-27 dispersed
Cam10g0419 Cam-Chr10:6543109 Cam02g1439 Cam-Chr2:27227124 2.60E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0419 . 12 148 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.8 2.0e-48 189.5
Cam02g0911 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.1e-38 154.5
Cam10g0401 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.0e-37 151.4
Cam10g0419 . 31 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.9 1.3e-50 196.8
Cam07g0956 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.4 7.2e-38 154.5
Cam02g0911 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cam10g0401 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.8 1.1e-50 196.4
Cam07g0956 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.8e-47 184.1
Cam02g1439 . 382 500 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.7e-43 172.6
Cam09g0608 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cam02g1439 . 369 485 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cam02g0911 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cam10g0401 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.1e-42 166.8
Cam07g0956 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cam09g0608 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cam09g0608 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cam10g0401 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cam02g0911 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cam07g0956 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cam02g1439 . 375 534 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 3.6e-55 211.5
Cam10g2025 . 74 207 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.7 5.1e-49 191.0
Cam02g0911 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cam07g0956 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cam10g0401 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.7e-41 164.1
Cam09g0608 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.6e-37 150.6
Cam07g0956 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cam02g0911 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cam10g0401 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cam02g1439 . 395 489 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cam09g0608 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cam02g0911 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.1e-52 201.4
Cam10g0401 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 5.0e-50 194.5
Cam07g0956 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.3e-45 177.2
Cam02g1439 . 395 505 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.7e-42 169.5
Cam09g0608 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cam02g1439 . 380 533 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 3.7e-55 211.5
Cam10g2025 . 74 207 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.1 1.1e-46 183.3
Cam02g0911 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cam10g0401 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cam07g0956 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cam09g0608 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006157 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 3 1 2 2 1 5 1 2 1 1 1 1 1 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52705 PF00808 CBFD_NFYB_HMF 2.30E-25 CL0012 Cam TF