Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0419 ATGTTGCTGACCTCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCACTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA 627 56.46 MLLTSNKPTSANNTPNSNHHHSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6543109 6543735 + CaPI482276_10g004190.1 Cam10g0419 137082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0419 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cam10g0419 208 SUPERFAMILY Histone-fold 55 148 IPR009072 GO:0046982(InterPro)
Cam10g0419 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 122 IPR003958 -
Cam10g0419 208 MobiDBLite consensus disorder prediction 1 48 - -
Cam10g0419 208 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0419 208 FunFam Nuclear transcription factor Y subunit B-6 47 159 - -
Cam10g0419 208 Gene3D Histone, subunit A 45 159 IPR009072 GO:0046982(InterPro)
Cam10g0419 208 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Cam10g0419 208 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Cam10g0419 208 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0419 Cam-Chr10:6543109 Cam10g2025 Cam-Chr10:34092939 6.50E-27 dispersed
Cam10g0419 Cam-Chr10:6543109 Cam02g1439 Cam-Chr2:27227124 2.60E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52705 PF00808 CBFD_NFYB_HMF 2.30E-25 CL0012 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0419 K08065 - csv:116402762 345.895