Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g0419 | ATGTTGCTGACCTCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCACTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA | 627 | 56.46 | MLLTSNKPTSANNTPNSNHHHSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6543109 | 6543735 | + | CaPI482276_10g004190.1 | Cam10g0419 | 137082 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g0419 | 208 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 41 | 148 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cam10g0419 | 208 | SUPERFAMILY | Histone-fold | 55 | 148 | IPR009072 | GO:0046982(InterPro) | |
Cam10g0419 | 208 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 59 | 122 | IPR003958 | - | |
Cam10g0419 | 208 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cam10g0419 | 208 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 89 | 105 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g0419 | 208 | FunFam | Nuclear transcription factor Y subunit B-6 | 47 | 159 | - | - | |
Cam10g0419 | 208 | Gene3D | Histone, subunit A | 45 | 159 | IPR009072 | GO:0046982(InterPro) | |
Cam10g0419 | 208 | PRINTS | CCAAT-binding transcription factor subunit A signature | 105 | 123 | - | - | |
Cam10g0419 | 208 | PRINTS | CCAAT-binding transcription factor subunit A signature | 124 | 142 | - | - | |
Cam10g0419 | 208 | PRINTS | CCAAT-binding transcription factor subunit A signature | 86 | 104 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam10g0419 | Cam-Chr10:6543109 | Cam10g2025 | Cam-Chr10:34092939 | 6.50E-27 | dispersed | |
Cam10g0419 | Cam-Chr10:6543109 | Cam02g1439 | Cam-Chr2:27227124 | 2.60E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52705 | PF00808 | CBFD_NFYB_HMF | 2.30E-25 | CL0012 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g0419 | K08065 | - | csv:116402762 | 345.895 |