Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0431 ATGGACCCCACTGACTCCGACCTCGCCGATCCATCTCATGCCTCCTCCTCCGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAGGTCCCCTTGCATTACCATCCCTCCTGGCCTCAGCCCCACTTCCTTTCTCGACTCTCCTGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAGTGACAACCATGGCCTTCTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTCGTTTCAAATGATTTGAGCCGATCAACCCAGATGGATACACATCCAGTTGGCTCAGGGGCTAGTGCTCCTGAAGCCGATGGAGATGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTGGTTTCAGATAGGTTGTCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAGCTGATATTATCTATAAGGGTACCCACGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGATTGTTCAGCATGTATGCTCAGACAGTTCATACCCTTGAGCCAAATGGAACTACAGAACCATCACTGGCCGCAAATGATAGCATCAACGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGATGACGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGTGGTTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTAGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCAAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCGAAAGCTGTTATAACTACGTATGAGGGGAAACATAATCACGATGTTCCCACTGCTAAAACTAGTAGCCATGATGTCGGGGGTCCATCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGCGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACTGGCACGGGTGGTGAGAATAGATCAAATGATTACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCAGCCCCGACCTATTTCGGTGTGATCAATAGAGGTATAAATCAACATGGATCGAGAGAGAGTTTGAGTGAAAGCCACAATAGAGAGATTGCTCCGCTAAATCATTCGTCTCACCCATATCCGACGAGCATTGGGAGAATACTAACAGGGCCTTAA 1728 46.18 MDPTDSDLADPSHASSSAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPVTTMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQVQGQPQPFTAPPMTKIEINVVSNDLSRSTQMDTHPVGSGASAPEADGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIADIIYKGTHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDDRLFSMYAQTVHTLEPNGTTEPSLAANDSINEGAGTTLPCKNQDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGTGGENRSNDYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGINQHGSRESLSESHNREIAPLNHSSHPYPTSIGRILTGP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6658452 6664096 - CaPI482276_10g004310.1 Cam10g0431 137094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0431 575 MobiDBLite consensus disorder prediction 128 142 - -
Cam10g0431 575 Gene3D WRKY domain 376 442 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 MobiDBLite consensus disorder prediction 122 144 - -
Cam10g0431 575 Gene3D WRKY domain 207 273 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 457 IPR044810 GO:0003700(InterPro)
Cam10g0431 575 Pfam WRKY DNA -binding domain 390 447 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 MobiDBLite consensus disorder prediction 551 567 - -
Cam10g0431 575 MobiDBLite consensus disorder prediction 161 209 - -
Cam10g0431 575 SUPERFAMILY WRKY DNA-binding domain 381 449 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 MobiDBLite consensus disorder prediction 183 198 - -
Cam10g0431 575 MobiDBLite consensus disorder prediction 445 467 - -
Cam10g0431 575 MobiDBLite consensus disorder prediction 264 301 - -
Cam10g0431 575 ProSiteProfiles WRKY domain profile. 208 272 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 MobiDBLite consensus disorder prediction 1 20 - -
Cam10g0431 575 FunFam WRKY transcription factor 33 376 442 - -
Cam10g0431 575 SUPERFAMILY WRKY DNA-binding domain 210 272 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 MobiDBLite consensus disorder prediction 541 575 - -
Cam10g0431 575 FunFam WRKY transcription factor 204 273 - -
Cam10g0431 575 SMART WRKY_cls 213 271 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g0431 575 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0431 Cam-Chr10:6658452 Cam11g0481 Cam-Chr11:6338641 6.30E-72 dispersed
Cam03g1073 Cam-Chr3:19826360 Cam10g0431 Cam-Chr10:6658452 3.70E-78 transposed
Cam10g0374 Cam-Chr10:6010127 Cam10g0431 Cam-Chr10:6658452 3.10E-82 transposed
Cam10g0431 Cam-Chr10:6658452 Cam02g0285 Cam-Chr2:3636466 2.30E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52707 PF03106 WRKY 3.30E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0431 - - - 0.0