Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0445 ATGATGGAATTTGACTCCCTCTCCGGCCGTGGTCAATACGACGTTGATCCAATTCAACTCAAATTGGACTTCAATTCCTCCTCCCATAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGACATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGCAAAGCAGCTCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACCGAGACAGTTTGCTTGGTCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACGGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGGCATGAGAATGGAAGACCATGAGACCCACCTGATTACGTTTGCAAGTGTATTTTTACAAAATTGCCATTTCTGTCCTCTGGTCCTTGTCCTTGGGTACTATTCTATTCTCCTTCACCATCACACAGTCTGTGCTCAAGTGATGACTCTAACGGCGTTCAACGGACCCAACCGGCCAGCCTCTGAACCGGAGAACGACCGGCCGGTGCCGTCTGCCGTTGCTGCTGAGCTTCTCCTTCTAGGACTCAGCCTCAGATATGAGTCGATTGAAATCGTTGCGGAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCTCTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCACTTCCATTGATGTGGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGTTTGCGGTTCAAAAGAGCGGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGTCACCTTTAGCAAAAGCAACGGTTGATACTTCAGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTGCAGAGAACTTGCTGACTGAAGAACCCCATGATGGAAAGAAATCCGACTTGAAGGAGGAAGAACTTCCTTATGACTCCAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACTGGTCTGGTCTTGAACAAGTCTGGGTCAAATCTCTTCAGAGAAGCTTTAAGGAGCTTGTCAGTTGACTCAGGAATTCAACCTTTGCTTCCATACTTCACATGCTTCATTGCCGATGAGGTTTCAAAAAATCTATGTAATTCTCAACTCTTGATTGCTTTGATGAGGATGGTCTGGTGCCTTCTCCGAAATCCACAGATACATATGGCACCTTATTTACACCAATTGATGCCATCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTATCTGACAATCATTGGGAGCTTAGAGACTTAGCGGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGACATACTTATCACAATATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAACTATTGCCTCAGCATTATGGTGCAGTTCAGGGGCTAGCAGATCTTGGTCCCGATGTGGTCCGCCAGCTTATACTACCAAATCTTGAACCGTATATGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAACTAGGAGACATGAAGCTTGGCAAGTTTACAGGACCTTACTGCATGCAGCTGGTAAATGTATGCATGGTTGGCTGAAGGTTTTTCCTCTCTCTCTATATCCACCAATGTGTAGTACTTCGAAGATAAATGCAAAGATCAATGGGAAAGTCGTGAAGACAATTTCAAATAAACGCAAAGCCAGTGCAGACAACTCCGTGCAGCAACCAGCACTCAAAAAGATGGCAATCGATAGCGCATTGGGTGCAATCCCGATGAACTCCATGATGGTCGATATGCAAGGGGCTGCATCTGGGCTCCCCACACCGCTTGGAGGTTCAAACATCGGCGTCGCTCGAAATTTTCCAAATGAAATGAGGGTAGGGAGGGAAGGTGAACTAGGCTTTAAGGGTTCTACTGCTCTTTCTATAGCATGGAAAGAAGAATTGGATGCTGGGTCATTGCTGACTTCGCTTTTTCCACTTTTTGGGGAAGATCTGTTTCCCTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA 2583 44.37 MMEFDSLSGRGQYDVDPIQLKLDFNSSSHRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPAKQLLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVGMRMEDHETHLITFASVFLQNCHFCPLVLVLGYYSILLHHHTVCAQVMTLTAFNGPNRPASEPENDRPVPSAVAAELLLLGLSLRYESIEIVAESIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSIDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKATVDTSVVAHWLAVEGVQPAVAENLLTEEPHDGKKSDLKEEELPYDSKAPTKHVISRDLQLYFEKITGLVLNKSGSNLFREALRSLSVDSGIQPLLPYFTCFIADEVSKNLCNSQLLIALMRMVWCLLRNPQIHMAPYLHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHTYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPDVVRQLILPNLEPYMQYLEMEKQKNETRRHEAWQVYRTLLHAAGKCMHGWLKVFPLSLYPPMCSTSKINAKINGKVVKTISNKRKASADNSVQQPALKKMAIDSALGAIPMNSMMVDMQGAASGLPTPLGGSNIGVARNFPNEMRVGREGELGFKGSTALSIAWKEELDAGSLLTSLFPLFGEDLFPFIPKPELSFFL 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6854202 6867352 + CaPI482276_10g004450.1 Cam10g0445 137108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0445 860 SMART tSNARE_6 163 230 IPR000727 -
Cam10g0445 860 SUPERFAMILY Histone-fold 331 403 IPR009072 GO:0046982(InterPro)
Cam10g0445 860 SMART TAF_cls 329 395 IPR004823 -
Cam10g0445 860 Gene3D Histone, subunit A 326 394 IPR009072 GO:0046982(InterPro)
Cam10g0445 860 Pfam TATA box binding protein associated factor (TAF) 333 393 IPR004823 -
Cam10g0445 860 FunFam Transcription initiation factor TFIID subunit 6 492 688 - -
Cam10g0445 860 SUPERFAMILY ARM repeat 501 734 IPR016024 -
Cam10g0445 860 Gene3D - 491 692 IPR046344 GO:0006367(InterPro)
Cam10g0445 860 Gene3D - 170 232 - -
Cam10g0445 860 SUPERFAMILY SNARE fusion complex 159 230 - -
Cam10g0445 860 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 168 230 IPR000727 -
Cam10g0445 860 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 333 859 IPR037796 GO:0000124(InterPro)|GO:0003713(PANTHER)|GO:0005669(PANTHER)|GO:0005669(InterPro)|GO:0006367(InterPro)|GO:0016251(InterPro)|GO:0016251(PANTHER)|GO:0046695(InterPro)|GO:0051123(PANTHER)
Cam10g0445 860 CDD TAF6C 492 704 IPR011442 GO:0006367(InterPro)
Cam10g0445 860 CDD SNARE_Qc 171 228 - -
Cam10g0445 860 FunFam syntaxin-51 isoform X2 170 232 - -
Cam10g0445 860 Pfam TAF6 C-terminal HEAT repeat domain 491 674 IPR011442 GO:0006367(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0176 Cam-Chr6:3639170 Cam10g0445 Cam-Chr10:6854202 5.70E-06 transposed
Cam09g1092 Cam-Chr9:11346987 Cam10g0445 Cam-Chr10:6854202 1.50E-88 transposed
Cam10g0445 Cam-Chr10:6854202 Cam02g0259 Cam-Chr2:3437868 3.20E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0445 K03131 - csv:101204807 969.918