Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0445 ATGATGGAATTTGACTCCCTCTCCGGCCGTGGTCAATACGACGTTGATCCAATTCAACTCAAATTGGACTTCAATTCCTCCTCCCATAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGACATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGCAAAGCAGCTCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACCGAGACAGTTTGCTTGGTCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACGGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGGCATGAGAATGGAAGACCATGAGACCCACCTGATTACGTTTGCAAGTGTATTTTTACAAAATTGCCATTTCTGTCCTCTGGTCCTTGTCCTTGGGTACTATTCTATTCTCCTTCACCATCACACAGTCTGTGCTCAAGTGATGACTCTAACGGCGTTCAACGGACCCAACCGGCCAGCCTCTGAACCGGAGAACGACCGGCCGGTGCCGTCTGCCGTTGCTGCTGAGCTTCTCCTTCTAGGACTCAGCCTCAGATATGAGTCGATTGAAATCGTTGCGGAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCTCTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCACTTCCATTGATGTGGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGTTTGCGGTTCAAAAGAGCGGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGTCACCTTTAGCAAAAGCAACGGTTGATACTTCAGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTGCAGAGAACTTGCTGACTGAAGAACCCCATGATGGAAAGAAATCCGACTTGAAGGAGGAAGAACTTCCTTATGACTCCAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACTGGTCTGGTCTTGAACAAGTCTGGGTCAAATCTCTTCAGAGAAGCTTTAAGGAGCTTGTCAGTTGACTCAGGAATTCAACCTTTGCTTCCATACTTCACATGCTTCATTGCCGATGAGGTTTCAAAAAATCTATGTAATTCTCAACTCTTGATTGCTTTGATGAGGATGGTCTGGTGCCTTCTCCGAAATCCACAGATACATATGGCACCTTATTTACACCAATTGATGCCATCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTATCTGACAATCATTGGGAGCTTAGAGACTTAGCGGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGACATACTTATCACAATATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAACTATTGCCTCAGCATTATGGTGCAGTTCAGGGGCTAGCAGATCTTGGTCCCGATGTGGTCCGCCAGCTTATACTACCAAATCTTGAACCGTATATGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAACTAGGAGACATGAAGCTTGGCAAGTTTACAGGACCTTACTGCATGCAGCTGGTAAATGTATGCATGGTTGGCTGAAGGTTTTTCCTCTCTCTCTATATCCACCAATGTGTAGTACTTCGAAGATAAATGCAAAGATCAATGGGAAAGTCGTGAAGACAATTTCAAATAAACGCAAAGCCAGTGCAGACAACTCCGTGCAGCAACCAGCACTCAAAAAGATGGCAATCGATAGCGCATTGGGTGCAATCCCGATGAACTCCATGATGGTCGATATGCAAGGGGCTGCATCTGGGCTCCCCACACCGCTTGGAGGTTCAAACATCGGCGTCGCTCGAAATTTTCCAAATGAAATGAGGGTAGGGAGGGAAGGTGAACTAGGCTTTAAGGGTTCTACTGCTCTTTCTATAGCATGGAAAGAAGAATTGGATGCTGGGTCATTGCTGACTTCGCTTTTTCCACTTTTTGGGGAAGATCTGTTTCCCTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA 2583 44.37 MMEFDSLSGRGQYDVDPIQLKLDFNSSSHRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPAKQLLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVGMRMEDHETHLITFASVFLQNCHFCPLVLVLGYYSILLHHHTVCAQVMTLTAFNGPNRPASEPENDRPVPSAVAAELLLLGLSLRYESIEIVAESIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSIDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKATVDTSVVAHWLAVEGVQPAVAENLLTEEPHDGKKSDLKEEELPYDSKAPTKHVISRDLQLYFEKITGLVLNKSGSNLFREALRSLSVDSGIQPLLPYFTCFIADEVSKNLCNSQLLIALMRMVWCLLRNPQIHMAPYLHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHTYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPDVVRQLILPNLEPYMQYLEMEKQKNETRRHEAWQVYRTLLHAAGKCMHGWLKVFPLSLYPPMCSTSKINAKINGKVVKTISNKRKASADNSVQQPALKKMAIDSALGAIPMNSMMVDMQGAASGLPTPLGGSNIGVARNFPNEMRVGREGELGFKGSTALSIAWKEELDAGSLLTSLFPLFGEDLFPFIPKPELSFFL 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6854202 6867352 + CaPI482276_10g004450.1 Cam10g0445 137108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0445 860 SMART tSNARE_6 163 230 IPR000727 -
Cam10g0445 860 SUPERFAMILY Histone-fold 331 403 IPR009072 GO:0046982(InterPro)
Cam10g0445 860 SMART TAF_cls 329 395 IPR004823 -
Cam10g0445 860 Gene3D Histone, subunit A 326 394 IPR009072 GO:0046982(InterPro)
Cam10g0445 860 Pfam TATA box binding protein associated factor (TAF) 333 393 IPR004823 -
Cam10g0445 860 FunFam Transcription initiation factor TFIID subunit 6 492 688 - -
Cam10g0445 860 SUPERFAMILY ARM repeat 501 734 IPR016024 -
Cam10g0445 860 Gene3D - 491 692 IPR046344 GO:0006367(InterPro)
Cam10g0445 860 Gene3D - 170 232 - -
Cam10g0445 860 SUPERFAMILY SNARE fusion complex 159 230 - -
Cam10g0445 860 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 168 230 IPR000727 -
Cam10g0445 860 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 333 859 IPR037796 GO:0000124(InterPro)|GO:0003713(PANTHER)|GO:0005669(PANTHER)|GO:0005669(InterPro)|GO:0006367(InterPro)|GO:0016251(InterPro)|GO:0016251(PANTHER)|GO:0046695(InterPro)|GO:0051123(PANTHER)
Cam10g0445 860 CDD TAF6C 492 704 IPR011442 GO:0006367(InterPro)
Cam10g0445 860 CDD SNARE_Qc 171 228 - -
Cam10g0445 860 FunFam syntaxin-51 isoform X2 170 232 - -
Cam10g0445 860 Pfam TAF6 C-terminal HEAT repeat domain 491 674 IPR011442 GO:0006367(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0445 K03131 - - csv:101204807 969.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0176 Cam-Chr6:3639170 Cam10g0445 Cam-Chr10:6854202 5.70E-06 transposed
Cam09g1092 Cam-Chr9:11346987 Cam10g0445 Cam-Chr10:6854202 1.50E-88 transposed
Cam10g0445 Cam-Chr10:6854202 Cam02g0259 Cam-Chr2:3437868 3.20E-160 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1742 . 8 363 SNARE and Associated Proteins AT3G24350 55.8 5.7e-87 318.2
Cam04g0520 . 1 309 SNARE and Associated Proteins AT1G08560 69.6 2.7e-101 365.5
Cam01g2004 . 484 786 SNARE and Associated Proteins AT2G18260 55.2 8.3e-87 317.4
Cam10g1787 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.3e-115 411.8
Cam01g1547 . 26 282 SNARE and Associated Proteins AT3G11820 73.2 2.2e-103 372.5
Cam03g0557 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 1.4e-92 336.7
Cam10g1328 . 510 764 SNARE and Associated Proteins AT3G11820 52.9 1.6e-69 260.0
Cam10g1787 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 5.6e-92 334.7
Cam01g1547 . 33 282 SNARE and Associated Proteins AT3G52400 65.2 6.0e-86 314.7
Cam03g0557 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 3.4e-81 298.9
Cam10g1328 . 512 764 SNARE and Associated Proteins AT3G52400 50.6 3.9e-61 232.3
Cam03g0557 . 1 299 SNARE and Associated Proteins AT4G03330 68.9 8.5e-108 387.1
Cam10g1787 . 1 284 SNARE and Associated Proteins AT4G03330 57.2 2.9e-84 308.9
Cam01g1547 . 1 297 SNARE and Associated Proteins AT4G03330 52.6 2.2e-79 292.7
Cam10g1328 . 501 764 SNARE and Associated Proteins AT4G03330 53.8 8.6e-68 254.2
Cam03g0557 . 1 299 SNARE and Associated Proteins AT1G61290 78.9 2.8e-127 451.8
Cam10g1787 . 1 284 SNARE and Associated Proteins AT1G61290 62.0 2.5e-91 332.4
Cam01g1547 . 1 297 SNARE and Associated Proteins AT1G61290 56.9 4.1e-86 315.1
Cam10g1328 . 516 764 SNARE and Associated Proteins AT1G61290 50.6 1.4e-62 236.9
Cam03g0557 . 1 299 SNARE and Associated Proteins AT1G11250 77.9 4.8e-124 441.0
Cam10g1787 . 1 284 SNARE and Associated Proteins AT1G11250 62.0 1.5e-93 339.7
Cam01g1547 . 1 292 SNARE and Associated Proteins AT1G11250 57.5 2.8e-87 318.9
Cam10g1328 . 500 764 SNARE and Associated Proteins AT1G11250 50.6 3.5e-66 248.8
Cam10g1328 . 488 783 SNARE and Associated Proteins AT3G03800 74.3 9.7e-112 400.2
Cam02g0975 . 58 291 SNARE and Associated Proteins AT3G03800 59.8 6.4e-71 264.6
Cam10g1328 . 488 682 SNARE and Associated Proteins AT5G08080 79.6 3.9e-78 288.1
Cam02g0975 . 54 244 SNARE and Associated Proteins AT5G08080 59.7 2.2e-52 202.6
Cam10g0137 . 25 280 SNARE and Associated Proteins AT5G16830 59.5 7.9e-76 280.8
Cam10g0137 . 25 280 SNARE and Associated Proteins AT5G46860 66.0 3.9e-80 295.0
Cam10g0137 . 25 280 SNARE and Associated Proteins AT4G17730 60.9 2.6e-73 272.3
Cam10g0137 . 89 280 SNARE and Associated Proteins AT1G32270 59.9 4.3e-52 202.2
Cam07g0410 . 83 418 SNARE and Associated Proteins AT5G05760 66.2 3.7e-112 401.7
Cam08g1742 . 8 363 SNARE and Associated Proteins AT3G24350 55.8 5.7e-87 318.2
Cam02g1577 . 35 350 SNARE and Associated Proteins AT5G26980 76.3 1.5e-123 439.5
Cam09g0545 . 1 318 SNARE and Associated Proteins AT5G26980 66.5 1.5e-102 369.8
Cam09g0545 . 1 318 SNARE and Associated Proteins AT4G02195 66.8 2.5e-105 379.0
Cam02g1577 . 35 348 SNARE and Associated Proteins AT4G02195 63.9 2.4e-100 362.5
Cam02g1577 . 35 350 SNARE and Associated Proteins AT3G05710 75.4 4.9e-125 444.5
Cam09g0545 . 1 318 SNARE and Associated Proteins AT3G05710 64.0 6.0e-99 357.8
Cam09g1092 . 77 309 SNARE and Associated Proteins AT1G16240 72.1 2.3e-89 325.5
Cam10g0445 . 32 247 SNARE and Associated Proteins AT1G16240 68.5 2.0e-77 285.8
Cam09g1092 . 76 309 SNARE and Associated Proteins AT1G79590 71.4 3.8e-88 321.6
Cam10g0445 . 27 247 SNARE and Associated Proteins AT1G79590 67.4 1.4e-79 293.1
Cam06g0176 . 125 315 SNARE and Associated Proteins AT1G28490 71.7 8.2e-67 250.4
Cam10g2004 . 77 340 SNARE and Associated Proteins AT3G09740 79.7 2.6e-113 405.2
Cam02g2177 . 1 264 SNARE and Associated Proteins AT3G09740 67.8 2.5e-95 345.5
Cam02g2177 . 1 264 SNARE and Associated Proteins AT3G45280 65.5 2.8e-91 332.0
Cam10g2004 . 77 340 SNARE and Associated Proteins AT3G45280 64.4 8.6e-88 320.5
Cam10g2004 . 77 337 SNARE and Associated Proteins AT3G61450 68.2 7.1e-95 344.0
Cam02g2177 . 1 261 SNARE and Associated Proteins AT3G61450 61.4 4.3e-84 308.1
Cam11g0668 . 65 309 SNARE and Associated Proteins AT1G51740 72.1 2.5e-89 325.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011323 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 0 1 1 0 1 1 1 0 3 3 1 31