Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0457 ATGGCCGAACCCATGGAGGAAAACGCGGTTGTTGATGCCGAACCCACTGCCGACAAGAGGCCTGTTGAGAATCATGGGGACGATGGACTTGCGGAGCCTCACTTGAGGAAGAAGCCCCGGAATGGTTGCGACTTGGGTCCGAATCTCAGAAGGGTCGCTGAGATTGTGTTGGTTATGTCCACAATGACGGCGTTGCGTGCTGGGAAGAAGCCGAGTGATGCTGAGGTTGAATTAATGGCTGAGGCTAGGGCTAAGCTGGCTCAGATTTGTGAAGGGTTGGCTCCTAAGGATATTGTGGGAAGGGAAGGTATTAGCTCTCTGATTGAAGATTTGGGGCTGCATGGCAATGCTAGGGATCAGAAGTTAGGGTTTCGGGGTACCAGGTTGACGATAGCGGAGAAGTTGGCACAGGCAAAGAAGAAGATGGAAGATTCCAAGAAATATGTCCCACCTCCAGGTTATGGATCTCATCCAACCCAAAAAAACTTCAGTTCATCAGTTGAGAGCCGTGGGCCATTGCCTACAGTACGGATGTTTCCTTCAGACAAATCAAGTACTGTCCCAACTTCTGTGGGAGGCACTGCGGGTACTCTGCCTTCAGGTCATGTTTCTGTTGCTGGTTCTACATCTATACAGGTTCAAGCACAACTACCGAGCAATGAAGTCAGGGCACATATTATTTCAAGTGGATATCCTATTGGTCATCAAGGAAGGGATTCTTCTTCACTCTTGCATGGCATTGAAAGACCATTAAATGGGACATATGGATCTCAAATGCAAGTTAACTCTTTGGCGAATCATCCTCTGGTGAGTGCTCCAACCTGGTCTGCTCAAACTCAATCCACCTTGTCGGCTAAAGGTGGGCCAGAGCACAAGTTTGCCAATCATTCTGCTGTTAATGCTCAGGGAACCACAGACTCAAGAGCATTAAGATCGTCTTCTCAAGCAGCAAGGGACCAGAGCTTTAGACCTCCTATTTCTCAAACTGGGACAGGGAATATTACTGGTTTGCAGCCGCCATTACAGAGCATGAATTTTGTGCAAGGACCTTCACTTTCTAATAACCATAATGAAATTGTCAAAATTATCCAGAAGCTCTTACAGCCACAACTTCCCGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTAACTTGCCAAACTTGTCAAGCTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGTGAATGGCACTGCCCTAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCACCCCCAAAGTTATCGGTCAATACCAGTGGAACACAGCCACAAGAGAAGAGATCAGGAGCCATAGAACAGAAGGCCAGTGCTGGTCAGCTGAAGTTAGTTTCTAATGGAGGTTCAGATTTGCCAAGTCCTCAGCCTGCTGACTATGGAAGCAATACCAATGAATCATCTGGTACCAAAATTCCAAATGTGGAGATTCATGGAAATAGTTTTTTACCAATTAGGAATGACATAGATGAGAAACCAACCTCTTCCACTTCCTTGAATACCCCTGCCAAATCCTTGGGGCTAGTTTCTGAACCCTCTTCTGCTGAGTTATCAAGTGAAATATCTGCTCAGCACATTAAAAGTTCTCAAGCATCAATAGGTGAAGATAAATCCTCAGCGAAAGCAGAGCCTCCAGAAGAATGCCGAACAACGGCTGACAATTCTAGTAACCCTAAACCCCCTGACATTTCTCAAATTGTTGATCAGCAAATGGTTTCTGAAGGTCCAGAGCTACCCTCCTCAACGGCAAGTGCTCATGATACTTCAAATGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTATCATCATAAATGGAGAGCAGGCTGAGACTTCTTCCGATGACTTGCATAATGTTGAATGGATTGGAAACCCACATCAGATTTCAGATATGAAGGCATATTACAAATCCTGTCGAGTTGATGGTGTTACATATAAAGTTGAAGATTTTGCTCTTTTTCAATCCAGCGGGAAATTGATGCCCTATAGGCTTCAGTCCTTCAGCCATGAATATGAAAGTGGGTTGAACTTGGCTATTCTTAAGAAGTGTTACTTTTATGAGGACTTGCCAAAGGAAGTTGCCCATCTCCACCCGTGCTCCCCTGAACAAGATGAGGTATATACATCCGATGGCCATATTTGTTTAGATGTGGGCTTAATTCGAGGCCCATGCGAAGTTCTTCCTTCTGCGAAGTATCAAGAAGAACTTGAAAGACGAAAACAATTGGGTCTTGGGGCAGATAATGGAATAAAGCCAATTTTCCTGTGCAAATGGTTTTATACTGAAGCTAACAAGGAATTTGTACCTTTTAGTGGCACAATCTGTGAAAACTTCTCATTGACGCAGAATCCAACCCTTGCAAGGACAAGTTGA 2535 44.34 MAEPMEENAVVDAEPTADKRPVENHGDDGLAEPHLRKKPRNGCDLGPNLRRVAEIVLVMSTMTALRAGKKPSDAEVELMAEARAKLAQICEGLAPKDIVGREGISSLIEDLGLHGNARDQKLGFRGTRLTIAEKLAQAKKKMEDSKKYVPPPGYGSHPTQKNFSSSVESRGPLPTVRMFPSDKSSTVPTSVGGTAGTLPSGHVSVAGSTSIQVQAQLPSNEVRAHIISSGYPIGHQGRDSSSLLHGIERPLNGTYGSQMQVNSLANHPLVSAPTWSAQTQSTLSAKGGPEHKFANHSAVNAQGTTDSRALRSSSQAARDQSFRPPISQTGTGNITGLQPPLQSMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQATINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQPQEKRSGAIEQKASAGQLKLVSNGGSDLPSPQPADYGSNTNESSGTKIPNVEIHGNSFLPIRNDIDEKPTSSTSLNTPAKSLGLVSEPSSAELSSEISAQHIKSSQASIGEDKSSAKAEPPEECRTTADNSSNPKPPDISQIVDQQMVSEGPELPSSTASAHDTSNVKKDGHEVLQENNVENFEAIIINGEQAETSSDDLHNVEWIGNPHQISDMKAYYKSCRVDGVTYKVEDFALFQSSGKLMPYRLQSFSHEYESGLNLAILKKCYFYEDLPKEVAHLHPCSPEQDEVYTSDGHICLDVGLIRGPCEVLPSAKYQEELERRKQLGLGADNGIKPIFLCKWFYTEANKEFVPFSGTICENFSLTQNPTLARTS 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7002528 7012672 - CaPI482276_10g004570.1 Cam10g0457 137120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0457 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 452 IPR013083 -
Cam10g0457 844 Gene3D - 677 841 IPR043151 -
Cam10g0457 844 ProSiteProfiles BAH domain profile. 697 825 IPR001025 GO:0003682(InterPro)
Cam10g0457 844 MobiDBLite consensus disorder prediction 445 609 - -
Cam10g0457 844 SUPERFAMILY FYVE/PHD zinc finger 381 447 IPR011011 -
Cam10g0457 844 ProSiteProfiles Zinc finger PHD-type profile. 388 440 IPR019787 -
Cam10g0457 844 MobiDBLite consensus disorder prediction 459 477 - -
Cam10g0457 844 MobiDBLite consensus disorder prediction 157 171 - -
Cam10g0457 844 MobiDBLite consensus disorder prediction 12 44 - -
Cam10g0457 844 MobiDBLite consensus disorder prediction 1 44 - -
Cam10g0457 844 MobiDBLite consensus disorder prediction 595 609 - -
Cam10g0457 844 SMART PHD_3 390 438 IPR001965 -
Cam10g0457 844 MobiDBLite consensus disorder prediction 486 521 - -
Cam10g0457 844 MobiDBLite consensus disorder prediction 179 201 - -
Cam10g0457 844 Pfam BAH domain 697 824 IPR001025 GO:0003682(InterPro)
Cam10g0457 844 MobiDBLite consensus disorder prediction 536 582 - -
Cam10g0457 844 ProSitePatterns Zinc finger PHD-type signature. 391 437 IPR019786 -
Cam10g0457 844 MobiDBLite consensus disorder prediction 299 338 - -
Cam10g0457 844 Pfam PHD-finger 391 437 IPR019787 -
Cam10g0457 844 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 824 - -
Cam10g0457 844 MobiDBLite consensus disorder prediction 140 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0457 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52708 PF00628 PHD 9.30E-09 CL0390 Cam TR