Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0471 ATGAGGAGAGGGAGAGGGGCGGCGGTGCCGGTACCGGCGGCGCGTGAACCACCTACCACCGGATCGGAACGGAGATACAGAGGAGTCCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACAAGAGTTTGGTTAGGGACCTTCGATTCCGCCGAAGACGCCGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGAGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCCACTTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATTCCCGATTTCAGATTAACCCTCATAGACCTACTTCCAGCAGTTTGAGCTCCACCGTCGAATCCTTCAGCGGTCCTCGCCCTCCCTCCGCCGCCGCTACTACGACCACTTCACCCTCCCGCCGTTACCCACGTACACCGCCTCTCCTCCCTGAAGATTGCCATAGCGATTGTGATTCTTCCTCTTCCGTCATCGACGATGGCGACGACATCGCTTCCTCCTCCATCCTTCCTCGGAAACCACCTCTGCCTTTCGATCTCAACATTCCACCTTCTGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTGA 651 55.91 MRRGRGAAVPVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDSRFQINPHRPTSSSLSSTVESFSGPRPPSAAATTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSILPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7144111 7144761 - CaPI482276_10g004710.1 Cam10g0471 137134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0471 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0471 216 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0471 216 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cam10g0471 216 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
Cam10g0471 216 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0471 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 174 - -
Cam10g0471 216 MobiDBLite consensus disorder prediction 94 169 - -
Cam10g0471 216 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0471 216 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0471 216 MobiDBLite consensus disorder prediction 1 28 - -
Cam10g0471 216 CDD AP2 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g0471 216 MobiDBLite consensus disorder prediction 113 150 - -
Cam10g0471 216 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0818 Cam-Chr8:10650863 Cam10g0471 Cam-Chr10:7144111 1.70E-18 dispersed
Cam09g0315 Cam-Chr9:3529548 Cam10g0471 Cam-Chr10:7144111 3.30E-19 dispersed
Cam09g2123 Cam-Chr9:35779969 Cam10g0471 Cam-Chr10:7144111 3.50E-52 dispersed
Cam10g0235 Cam-Chr10:4112772 Cam10g0471 Cam-Chr10:7144111 4.00E-19 dispersed
Cam10g0471 Cam-Chr10:7144111 Cam11g1809 Cam-Chr11:30601914 6.00E-23 dispersed
Cam10g0471 Cam-Chr10:7144111 Cam07g0252 Cam-Chr7:3639491 9.20E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52709 PF00847 AP2 5.00E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0471 K09286 - csv:101219993 295.049