Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0478 ATGGCTGCTTCATCATCCCTTATGTCACACTCTTTGCATGCGCATGCGTCCACTGAAACGGCCATAAAATGCTGTAAGGGCTATATGTACGGCAACTCCCGGATTGGATACTCCAAGTCCAAGTTCCTAACAAGTCCTAAATTTTCACATGACGAGAATTCATCAAAATGGGAATGCATTGAGAAACGTCCAATGAGAAATGAAATCCGGTGCCGAGCTGTGGAAATTGAGAATTCACTTTCTCCTTTTGTTAGCAAAAAGTTTGAGCTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGAGATTCTCAATTATATTTTTGAAGTTGCACTTGATATGGAAAAGATTGAAAAAAGTTCATCTAAAAGCCAAATGCTGAAGGGATATTTGATGGCTACCCTGTTCTACGAGCCCTCAACTAGAACTAGGCTTTCGTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTATTGACAACTGAAAATGCGCGGGAGTTTTCTTCAGCAGCCAAAGGAGAAACCCTTGAAGATACGATCCGAACTGTTGAGGGATACTCGGATATAATTGTGATGCGGCATTTTGAAAGTGGTGCTGCTAAGAAAGCTGCTGCAACAGCTAGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTCTAGATGTATATACTATTCAGAGAGAGATAGGAAAACTTGATGGAATTAAAGTCGGGCTCGTGGGAGATCTTGCTAATGGGAGAACTGTAAGGTCACTTGCATATTTGCTCGCCAAGTATAAAGATGTGAAAATATACTTTGTCTCTCCAGATGTTGTAAAAATGAAGGATGATATAAAAGACTATTTGACATCACAAGATGTGAAATGGGAAGAATGCGACAACTTGATGGAAGTTGCGTCAGAGTGTGATGTTGTATATCAAACTCGTATTCAGCGGGAAAGATTTGGAGAGAGGGTTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAAAGTGATGCAAAGACATGCTGTGGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACTGTTGATGTAGATGAGGATCCAAGGGCTGCCTACTTCCGGCAAGCAAAGAATGGTCTCTATATTCGGATGGCACTCGTGAAACTCTTGCTACTTGGTTGGTGA 1191 41.56 MAASSSLMSHSLHAHASTETAIKCCKGYMYGNSRIGYSKSKFLTSPKFSHDENSSKWECIEKRPMRNEIRCRAVEIENSLSPFVSKKFELDDVIEAQQFDREILNYIFEVALDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKKAAATASIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDVKIYFVSPDVVKMKDDIKDYLTSQDVKWEECDNLMEVASECDVVYQTRIQRERFGERVDLYEQARGKYIVDKNVLKVMQRHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGW 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7212356 7214890 + CaPI482276_10g004780.1 Cam10g0478 137141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0478 396 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 92 233 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 NCBIfam aspartate carbamoyltransferase 92 393 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Cam10g0478 396 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 136 143 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 86 393 - -
Cam10g0478 396 Gene3D Aspartate/ornithine carbamoyltransferase 93 388 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 Gene3D Aspartate/ornithine carbamoyltransferase 221 380 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 PRINTS Aspartate carbamoyltransferase signature 166 175 - -
Cam10g0478 396 PRINTS Aspartate carbamoyltransferase signature 312 321 - -
Cam10g0478 396 PRINTS Aspartate carbamoyltransferase signature 374 388 - -
Cam10g0478 396 PRINTS Aspartate carbamoyltransferase signature 352 357 - -
Cam10g0478 396 PRINTS Aspartate carbamoyltransferase signature 126 148 - -
Cam10g0478 396 PRINTS Aspartate carbamoyltransferase signature 220 237 - -
Cam10g0478 396 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 240 391 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 348 357 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 358 381 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 136 155 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 221 232 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 FunFam Aspartate carbamoyltransferase 92 224 - -
Cam10g0478 396 FunFam Aspartate carbamoyltransferase 2 225 380 - -
Cam10g0478 396 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 90 393 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cam10g0478 396 Hamap Aspartate carbamoyltransferase [pyrB]. 90 395 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0478 K00609 - - csv:101220705 735.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0266 Cam-Chr4:8919747 Cam10g0478 Cam-Chr10:7212356 8.20E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37