Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0535 ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAGCTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGCCATTTTGATCGATGCTGTTCGGATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTGAAGGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCCGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGATCACGTACTCCGACCTCCTGTTGCTTAA 705 48.51 MVSPETTNWLFDYALMDDIPVSDANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRAESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7883624 7887025 + CaPI482276_10g005350.1 Cam10g0535 137198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0535 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cam10g0535 234 Coils Coil 130 178 - -
Cam10g0535 234 FunFam Transcription factor bHLH34 66 124 - -
Cam10g0535 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cam10g0535 234 CDD bHLH_AtILR3_like 83 155 - -
Cam10g0535 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
Cam10g0535 234 Gene3D - 78 155 IPR036638 GO:0046983(InterPro)
Cam10g0535 234 PANTHER BHLH TRANSCRIPTION FACTOR 7 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cam10g0535 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1185 Cam-Chr2:23593294 Cam10g0535 Cam-Chr10:7883624 3.00E-10 dispersed
Cam05g0496 Cam-Chr5:4389238 Cam10g0535 Cam-Chr10:7883624 8.50E-28 dispersed
Cam02g0861 Cam-Chr2:11349305 Cam10g0535 Cam-Chr10:7883624 1.80E-60 transposed
Cam06g1771 Cam-Chr6:28893540 Cam10g0535 Cam-Chr10:7883624 5.90E-06 transposed
Cam10g0535 Cam-Chr10:7883624 Cam03g0514 Cam-Chr3:5988877 3.40E-56 wgd
Cam10g0535 Cam-Chr10:7883624 Cam05g1646 Cam-Chr5:24234879 7.00E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52711 PF00010 HLH 1.10E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0535 - - - 0.0