Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0555 ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGAGGCTTCTAGAAATCGCTACGAAGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCGCCGCCGCCGCCGCCGCCTCCGATCCCAATTTGCACATCATGGGCTTAGGCCTCGATTGGAATCAACCCCTCTTTAGGGGCGGCGGAGAGAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAGCCGGAAAATATGAATTTAAATATGCAAGAAACAGGGCAGCAGCAGCAGCAGCAGCAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGGGAGTCTCCGGCGACCGAATTTAAGGCAATAAACAGAGGATTTTCATTAGATCATCATCAAGCTCAACCCCAGTTCAGTAGCCCTTCTCACTACAGCTCCGGTGACAGTACCGTCACCAGTTTTCCGATCGACACCGCCGCCAATTTATACGGAAATTCCGCAACATTATTACAAGGGTTATTAGCCAGCGGCGGGGAGCAGCAGCAGCAACAGCAACAACAACAACAACAAGTCTCAGCGGCTGTAGGTATGAACTACCCTTACAATTCCCATTTCGGAATGAACTCCGGCGAGTTAATGGCGGGAGGAGCGTCGTGGTCGCCGTCTAAAGTGCCTCAGTTTTTAAGAAACTCACCGCCAAAAGGGGCGGCGGCGGCAACTCCACATAGTCAGTTACAATTTTCGAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGACCCAGTTATTTTCCGGCGTCGTACAACACCGCTGCAGGTTTCGCCGATAAATCAAAGAATATATCGGAGGTTGGTGATTCGGTAACAACAGTAGGAAAAAAAAGTGGAAATGATCACAATCAGCAATCCGCCGCTGCTAAAAGGCCTCGAAATGAAACTCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAGCAACAACATCAGCAGCAGAGATGTGAGAAATCAAAGGAAGGAGAAGGGGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACTTTCAGATAA 1317 49.35 MAEEFQSTGNWWEASRNRYEAGISPSSSSITTFVDHSDSAAAAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPENMNLNMQETGQQQQQQQQQIQWMRSEKLYSGESPATEFKAINRGFSLDHHQAQPQFSSPSHYSSGDSTVTSFPIDTAANLYGNSATLLQGLLASGGEQQQQQQQQQQQVSAAVGMNYPYNSHFGMNSGELMAGGASWSPSKVPQFLRNSPPKGAAAATPHSQLQFSNNTAFWNASDMKDVRPSYFPASYNTAAGFADKSKNISEVGDSVTTVGKKSGNDHNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQQQRCEKSKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8198150 8202266 - CaPI482276_10g005550.1 Cam10g0555 137218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0555 438 CDD bHLH_AtbHLH_like 321 372 IPR045239 -
Cam10g0555 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 102 417 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam10g0555 438 MobiDBLite consensus disorder prediction 292 321 - -
Cam10g0555 438 SMART finulus 326 370 IPR011598 GO:0046983(InterPro)
Cam10g0555 438 FunFam Transcription factor bHLH123 family 325 389 - -
Cam10g0555 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 379 IPR036638 GO:0046983(InterPro)
Cam10g0555 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983(InterPro)
Cam10g0555 438 Gene3D - 325 395 IPR036638 GO:0046983(InterPro)
Cam10g0555 438 MobiDBLite consensus disorder prediction 292 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2297 Cam-Chr1:35172402 Cam10g0555 Cam-Chr10:8198150 1.70E-55 dispersed
Cam02g0688 Cam-Chr2:8130816 Cam10g0555 Cam-Chr10:8198150 2.60E-26 dispersed
Cam05g2051 Cam-Chr5:29189059 Cam10g0555 Cam-Chr10:8198150 6.30E-27 dispersed
Cam07g1250 Cam-Chr7:26885546 Cam10g0555 Cam-Chr10:8198150 5.60E-23 dispersed
Cam09g0188 Cam-Chr9:2614861 Cam10g0555 Cam-Chr10:8198150 1.30E-20 dispersed
Cam07g1545 Cam-Chr7:30117012 Cam10g0555 Cam-Chr10:8198150 3.80E-25 transposed
Cam11g0081 Cam-Chr11:2512765 Cam10g0555 Cam-Chr10:8198150 5.70E-28 transposed
Cam10g0555 Cam-Chr10:8198150 Cam03g0531 Cam-Chr3:6158815 1.60E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0555 - - - 0.0