Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0560 ATGTCCCCAATCAAACCTCCACCACTAAACCGACCGGAGTTTCGAACAATGGCCATTAGAACCGCTTTCGAAAAAGCCGTCGAGGCTCAAAATTATGCAACCCGGTTTGGTCCGAGCTGTAAAACCACGCGCCAGAGAGCCGCGTGGACTGACTGTTTGAAGCTCTACAACGACGTCGTTTTCCAATTAAACCGTACCCTCCAATGCGTTCTTAGCGACGGAACAATCCAACGTCGCCGTTGTACGGATTTCGATGCGCAAACGTGGCTTAGCTCTGCTCTTACTGACATCGATTTGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAGCTCCGATCAAATGCCAGAATGTTTCCAAGATGATTAGTAATTGCTTGGCCATTAATGGGGTATTTTTAAAAGAAGGGGTTAAAAGTGTAAATAGAATCGGAGTGGAGTTTGATCAAAATGGGTCGTTTCCGATGTGGGTTTCGGATGGTGATCGGAAATTGTTGCAGTCGTCCGCTAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCTGGGAAATTTCGGACGGTTCAGGCGGCGATCGATGCAGCGGCGAGGAGGCGTGGGAGGGGGCGATTTGTAATTTATGTAAAACGAGGGGTTTATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATTTAATGTTGGTGGGAGATGGGATGAGATTTACTGTGATTACAAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCTGGTATTCAAGGTCCAGGCTTCATCGCTCGAGACATAAGGTTCGTAAACACAGCCGGTCCACGAATGGGCCAAGCAGTTGCACTACGATCATCCTCGGACCTATCTGTGTTCCATCGATGCAGCTTCGAGGGCTACCAAGACACTCTAATGGTACTCTCACAAAGACAATTCTACAAACAATGTTACATTTACGGTACAATTGACTTCATCTTTGGGAACGCAGCAGTAGTTTTACAAAATTGCATGATTTACGTAAGGAGGCCTTTAAAGGGCCAAGTCAATGTCATAACTGCCCAAGGCCGAGAGGACCCGTTTCAGAACAGCGGAATCTCCATCCACAACTCTCAAATACGAGCCGCTGCTGATTTGCGGCCCATGATTGGCTCGGTTAAGACGTACATGGGTCGGCCCTGGAAGAAGTATTCGCGGACAGTCATTATGAGAAGCTACATTGATAGCTTGGTCAGCCCAGCCGGGTGGTTGGCGTGGCAAAAAAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTATCGTAATATTGGGCCTAGGGCTTCCACACGATTTAGAGTCAAATGGCCGGGTTTTCATGTTATTAGAAGCCCAAATGTGGCTTCTAAGTTCACTGTCCAGAGACTCATCGCCGGCCAAACTTGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGCCTATGA 1473 48.4 MSPIKPPPLNRPEFRTMAIRTAFEKAVEAQNYATRFGPSCKTTRQRAAWTDCLKLYNDVVFQLNRTLQCVLSDGTIQRRRCTDFDAQTWLSSALTDIDLCLSGAADLNVTDFIAPIKCQNVSKMISNCLAINGVFLKEGVKSVNRIGVEFDQNGSFPMWVSDGDRKLLQSSAKVRANLVVAKDGSGKFRTVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMIGSVKTYMGRPWKKYSRTVIMRSYIDSLVSPAGWLAWQKSKFAQATLYYGEYRNIGPRASTRFRVKWPGFHVIRSPNVASKFTVQRLIAGQTWLPATGVPFKLGL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8498262 8501088 + CaPI482276_10g005600.1 Cam10g0560 137223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0560 490 ProSitePatterns Pectinesterase signature 1. 203 222 IPR018040 -
Cam10g0560 490 Gene3D - 171 490 IPR012334 -
Cam10g0560 490 ProSitePatterns Pectinesterase signature 2. 322 331 IPR033131 -
Cam10g0560 490 FunFam Pectinesterase 171 490 - -
Cam10g0560 490 CDD PMEI-like_3 7 137 - -
Cam10g0560 490 SUPERFAMILY Pectin lyase-like 174 489 IPR011050 -
Cam10g0560 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 8 135 IPR035513 -
Cam10g0560 490 SMART PMEI_2 2 131 IPR006501 GO:0004857(InterPro)
Cam10g0560 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 134 IPR035513 -
Cam10g0560 490 PANTHER PECTINESTERASE 20 481 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam10g0560 490 Pfam Plant invertase/pectin methylesterase inhibitor 12 131 IPR006501 GO:0004857(InterPro)
Cam10g0560 490 NCBIfam pectinesterase inhibitor domain 9 133 IPR006501 GO:0004857(InterPro)
Cam10g0560 490 Pfam Pectinesterase 177 475 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0874 Cam-Chr5:7890130 Cam10g0560 Cam-Chr10:8498262 1.70E-152 dispersed
Cam10g0560 Cam-Chr10:8498262 Cam11g1474 Cam-Chr11:27475114 9.50E-93 dispersed
Cam10g0560 Cam-Chr10:8498262 Cam01g0651 Cam-Chr1:7169517 7.50E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0560 K01051 - csv:101213944 855.514