Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0572 ATGTGTTCTAAAGTATCAGTAGTTCCAAGCTCTTTGGATGTGGCTCGAAGGTCTGCCCAATTTGAAGCTAGTGTTTGGGGAGATTACTTTCTTTCCTATCATTCTCTTCCTCCAGAACAAGCCAACAAGTCGACGGAGAGACAGATGGAAGAATTGAAAGAAGAAATAAAAAGTCAGTTACTGATTACTACAACAAAAGATAACATTGAGAAATTAAGACTCATCGATTCAATTCAACGCTTAGGCGTTTCTTACCATTTCGAAACTGAGATCCACAAAGTTCTTCAACAACTTTATCATAATAGTGCTCAATATGATAATGACCTTCACACTATGACTCTCCGATTCAGACTTCTTAGGCAACAAGGCTACAACATATCATCTCAGCCTTTAGATAAGTTTCGAGGCAAATGGGGAAGTTCATATAATAACAATAATGTAGAAGAACTCTTGAGTTTATACGAAGTATCGCAATTGAGGATGCGAGGAGAGGAAGCATTGGACGAAGCATTTCGTTTTGCTACCGCTCAGTTGGAAGCCATTGTCGGAGACTCTGCCACCGATACAACGGTTGCAGCGGAAGTTCGCCGTGCTTTGAAGTGGCCGCTGTACAAGAATCTGCCAAGGCTTGGAGCCAGACACTACATTGGTTTGTTCAGCGAGAAGCCATGGAGGAATGAGAGTTTGCTTAACTTTGCAAAGATGGATTTCAACCAATTGCAAAAACTTCATCAGAAAGAGATTGCTTACATCTCAAAGTGGTGGGAAGATTATGGATTTGCAGAAAAGCTATCATTTGCAAGGAACAGGATTGTGGAGGGATATTTTTTTGCTCTTGGGATATTCTTTAAACCTCAATTTTTAAGTGCCAGACTTATTATGACCAAAATCATTGCTATTGGGTCAATGTTAGATGACATTTATGATGTTTATGGCACATTTGAAGAACTCAAACTCTTGACCCTTGCACTTGAGAGGCGTCTCTCTGACCTGATAACTAGTATCGCCTCCCCGCCCAGCTCTATCAGCAGGCCTTTTCTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGACCCTGATCCGCATAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCCGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAG 1179 43.0 MCSKVSVVPSSLDVARRSAQFEASVWGDYFLSYHSLPPEQANKSTERQMEELKEEIKSQLLITTTKDNIEKLRLIDSIQRLGVSYHFETEIHKVLQQLYHNSAQYDNDLHTMTLRFRLLRQQGYNISSQPLDKFRGKWGSSYNNNNVEELLSLYEVSQLRMRGEEALDEAFRFATAQLEAIVGDSATDTTVAAEVRRALKWPLYKNLPRLGARHYIGLFSEKPWRNESLLNFAKMDFNQLQKLHQKEIAYISKWWEDYGFAEKLSFARNRIVEGYFFALGIFFKPQFLSARLIMTKIIAIGSMLDDIYDVYGTFEELKLLTLALERRLSDLITSIASPPSSISRPFLPRRSVSRVSWDPDPHRPRANTHRLRHGLPGYLIPFAPHAFAPQRR 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8786614 8792567 - CaPI482276_10g005720.1 Cam10g0572 137235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0572 392 SUPERFAMILY Terpenoid synthases 225 329 IPR008949 -
Cam10g0572 392 Gene3D - 66 225 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cam10g0572 392 Pfam Terpene synthase family, metal binding domain 257 326 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cam10g0572 392 Coils Coil 42 62 - -
Cam10g0572 392 PANTHER OS04G0344100 PROTEIN-RELATED 22 328 - -
Cam10g0572 392 Pfam Terpene synthase, N-terminal domain 25 199 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cam10g0572 392 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 222 IPR008930 -
Cam10g0572 392 Gene3D Farnesyl Diphosphate Synthase 24 326 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0572 K15803 - - csv:101211540 495.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0572 Cam-Chr10:8786614 Cam10g0576 Cam-Chr10:8897016 7.40E-72 dispersed
Cam10g0572 Cam-Chr10:8786614 Cam10g0573 Cam-Chr10:8831967 1.10E-64 tandem
Cam01g1050 Cam-Chr1:15195857 Cam10g0572 Cam-Chr10:8786614 4.50E-09 transposed
Cam09g2320 Cam-Chr9:37604401 Cam10g0572 Cam-Chr10:8786614 3.40E-26 transposed
Cam10g0572 Cam-Chr10:8786614 Cam03g0523 Cam-Chr3:6069922 2.20E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g399 Blo03g00605 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00587 Cam10g0572 Cec10g0605 Cco10g0581 Clacu10g0606 Cmu10g1418 Cre10g0819 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00693 Tan01g1634 . . Hepe07g0540 Mch10g1151 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25