Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0575 ATGTCTTCTCAAGTTTCAAATTTTTCTGCGTCAGTTTTGAAGCCCAATGACATTCCTCATACTAAGCGTTCCATTGCAAATTTTCATCCAACTATTTGGAAGGACCATTTCCTTTCACTTACCTTTGACGATGCATTGAAGGTAGATGATGGAATGAAAGAAGGATCAGTTGAAAAGTTGAAAGAAGAAATAAGAATGATGGTGGTTGCTTCTGAGGGAAATCCAATGGAGAAGCTAAAGTTGGTTGATTCAATCCAACGGCTGGGTGTATCTTATCATTTTGAAAATGAGATTGACCAAGTTTTAGAACACATATATATGTCTTATTCCATTTTATTAACTAAAGATAGTGGTGAAGATCTTCATACTACTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTATAAGATTTCATGCGATATATTCTCAAAGTTGATGGACAAGAATGGAAAATTTAAAGAATCATTGGGTGAGGATGAAAGAGGAATTTTGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGATGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTGAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGGAATGCCTTGAAATTTCCTATTAGAAAAGGTGTTCCAAGAATCAAGACAAGACAGTATTTGGCAATATACCAACAACATCCTTCACACAATGAGACTTTGCTTAAATTCTTAAAACTAGACTTCAACATATTACAAAGACTTCACCAGAAAGAGTTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGAACGTCCCAATGAACTTTCCATTTGCGAGAGATAGAATTGTGGAGTGTTACTTTTGGACATTGGGTGTGTATTTTGAACCTCATTTCAAGATTGGGAGGAAAATAGTTACTAAAGTGATCGCAATGACCTCAATTTTGGATGATATATATGATGCTTATGGAACATTTGAAGAACTCCAAATTTTCACTCTAGCAATCAAAAGATGGGACATAAGCATGATTAATCTACTCCCGGAGTATATGAAAGTTTATTATATAGCTTTGCTTGATCTTTTCGAAGAGATTGATAAAGAGATAGTGAAGGATGGAACATCATATCGCGCTCACTTTGCAAAGGAAGCAATGAAAAGGCAAGCTGAATCCTATTTCAAAGAAGCTGAATGGCTAAACAAAAAATATAAACCAAAATTTGAAGAATACATGGAAGTGGCTTTAGTTAGCTCAGGTTATGCACTACTTGCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTGTTTGATTGGCTTTCAGACTGTCCTAAAATTCTTGAAGCCTCAACCATGATTTGTAGACTCATGGACGATGTTGTCTCCTACGAGTTTGAAAAACAAAGGGAACATGTTGTTTCCGCGGTTGAATGTTACATGGACAATTGTGGCTACTCGAAGGAAGAAACATGTGCCGAACTGGAAAGGCAAGTAGAAGATGCATGGAAGAATATAAATGAATGTTGCCTTCATCCAACGACGGTTCCAATGCCATTTTTATTGTGTGTATTAAATCTTAGCAGAGTTATAGCCCTACTTTATTGTGATGAGGATGGATACACAAATACTAAGGGTAGGACTAAACTTCTTATCCAGTCTATACTTGTTGATCCAGTGTGA 1692 36.41 MSSQVSNFSASVLKPNDIPHTKRSIANFHPTIWKDHFLSLTFDDALKVDDGMKEGSVEKLKEEIRMMVVASEGNPMEKLKLVDSIQRLGVSYHFENEIDQVLEHIYMSYSILLTKDSGEDLHTTALLFRLLRQQGYKISCDIFSKLMDKNGKFKESLGEDERGILSLYEASHMRGHGEDVLEEALEFTTKHLKTYIEYSNNPHFAAEVRNALKFPIRKGVPRIKTRQYLAIYQQHPSHNETLLKFLKLDFNILQRLHQKELSEICRWWKDLNVPMNFPFARDRIVECYFWTLGVYFEPHFKIGRKIVTKVIAMTSILDDIYDAYGTFEELQIFTLAIKRWDISMINLLPEYMKVYYIALLDLFEEIDKEIVKDGTSYRAHFAKEAMKRQAESYFKEAEWLNKKYKPKFEEYMEVALVSSGYALLATISFVCMGDIATKEVFDWLSDCPKILEASTMICRLMDDVVSYEFEKQREHVVSAVECYMDNCGYSKEETCAELERQVEDAWKNINECCLHPTTVPMPFLLCVLNLSRVIALLYCDEDGYTNTKGRTKLLIQSILVDPV 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8870182 8875063 + CaPI482276_10g005750.1 Cam10g0575 137238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0575 563 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 562 IPR034741 -
Cam10g0575 563 CDD Terpene_cyclase_plant_C1 23 562 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cam10g0575 563 FunFam Isoprene synthase, chloroplastic 216 553 - -
Cam10g0575 563 FunFam Isoprene synthase, chloroplastic 73 238 - -
Cam10g0575 563 SUPERFAMILY Terpenoid synthases 238 563 IPR008949 -
Cam10g0575 563 Pfam Terpene synthase family, metal binding domain 269 507 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cam10g0575 563 Gene3D Farnesyl Diphosphate Synthase 30 552 IPR008949 -
Cam10g0575 563 Gene3D - 73 238 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cam10g0575 563 Pfam Terpene synthase, N-terminal domain 32 212 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cam10g0575 563 PANTHER OS04G0344100 PROTEIN-RELATED 27 544 - -
Cam10g0575 563 SFLD Isoprenoid Synthase Type I 238 562 - -
Cam10g0575 563 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 238 IPR008930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0575 K15803 - - csv:101211697 892.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0094 Cam-Chr2:2047989 Cam10g0575 Cam-Chr10:8870182 3.20E-92 dispersed
Cam03g0527 Cam-Chr3:6105785 Cam10g0575 Cam-Chr10:8870182 6.50E-74 dispersed
Cam10g0359 Cam-Chr10:5807092 Cam10g0575 Cam-Chr10:8870182 8.50E-138 dispersed
Cam10g0360 Cam-Chr10:5824424 Cam10g0575 Cam-Chr10:8870182 6.50E-145 dispersed
Cam10g0573 Cam-Chr10:8831967 Cam10g0575 Cam-Chr10:8870182 6.60E-222 dispersed
Cam10g0575 Cam-Chr10:8870182 Cam10g0577 Cam-Chr10:8910694 1.20E-51 proximal
Cam10g0575 Cam-Chr10:8870182 Cam10g0576 Cam-Chr10:8897016 5.10E-183 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337