Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0577 ATGGACTTGGCATTAAGTACCACAGGTTATCCCATGCTTATAACTATTTCATTTCTCGGAATGGGTGACATGGTTACAAACGAGGTACTTGAATGGCTTTCTAAAGGACCTCAAATTATTAAAGCCTCAACAATCATTTGTAGACTCATGGATGACATCGTTTCCCACAAGTTTGAGCAAGAAAGGGAACATGTTGCTTCTGCTGTTGAATGTTACATGGAGCAATATGGTTGTTCAGAGGAAGAAGCTTGTGTTGAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACACAAATGAAGCATGTCTTCACCCAATCGCTGTTCCAATGCCTATTCTAATGCGTGTAGTGAATTTTTCAAGAGTTATGAACTTGCTTTATTTGGATGAAGATGGATACACAAATGCCAGGAGTGAAACAAAATCTCTTATCAAATCTCTTCTTGTACACCCAATGCCTTATTAA 465 38.71 MDLALSTTGYPMLITISFLGMGDMVTNEVLEWLSKGPQIIKASTIICRLMDDIVSHKFEQEREHVASAVECYMEQYGCSEEEACVELHKQVVDAWKDTNEACLHPIAVPMPILMRVVNFSRVMNLLYLDEDGYTNARSETKSLIKSLLVHPMPY 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8910694 8911882 + CaPI482276_10g005770.1 Cam10g0577 137240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0577 154 Gene3D Farnesyl Diphosphate Synthase 1 152 IPR008949 -
Cam10g0577 154 PANTHER OS04G0344100 PROTEIN-RELATED 3 151 - -
Cam10g0577 154 SUPERFAMILY Terpenoid synthases 1 152 IPR008949 -
Cam10g0577 154 Pfam Terpene synthase family, metal binding domain 1 97 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0577 K15803 - - csv:101211452 258.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0569 Cam-Chr10:8779902 Cam10g0577 Cam-Chr10:8910694 1.40E-22 dispersed
Cam10g0575 Cam-Chr10:8870182 Cam10g0577 Cam-Chr10:8910694 1.20E-51 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337